View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13150_low_12 (Length: 410)
Name: NF13150_low_12
Description: NF13150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13150_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 27 - 318
Target Start/End: Original strand, 10818556 - 10818848
Alignment:
| Q |
27 |
gttcctcttcatttatccatgttcctttatcaaattgcaattttactacattcatagattgctaattttattgctcggactctttgatctcttagttgtc |
126 |
Q |
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| T |
10818556 |
gttcctcttcatttatccatgttcctttatcaaattgcaattttactacattcatagattgctaattttattgctcggactctttgatctcttagttgtc |
10818655 |
T |
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| Q |
127 |
attgatatttgccacacatgattttcttgatgtgattttttatcattatcagatatatggtgagacccctac-nnnnnnntatatggatatggtgagaca |
225 |
Q |
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| T |
10818656 |
attgatatttgccacacatgattttcttgatgtgattttttatcattatcagatatatggtgagacccctacaaaaaaaatatatggatatggtgagaca |
10818755 |
T |
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| Q |
226 |
tcaaagacataaatacctaaaaagaagtccaacgtataataaagctcgtgatcgggcaaagtttcattggcgtgacccatgcaatcacaaagc |
318 |
Q |
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| T |
10818756 |
tcaaagacataaatacctaaaaagaagtccaacgtataataaagctcgtgatcgggcaaagtttcattggcgtgacccatgcaatcacaaagc |
10818848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 10818884 - 10818924
Alignment:
| Q |
354 |
ggaaattcttatgtatttttcacaattctctacaaatatac |
394 |
Q |
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| T |
10818884 |
ggaaattcttatgtatttttcacaattctctacaaatatac |
10818924 |
T |
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