View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13150_low_19 (Length: 235)
Name: NF13150_low_19
Description: NF13150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13150_low_19 |
 | |
|
| [»] scaffold0045 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0045 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 61070 - 60852
Alignment:
| Q |
15 |
agatgcatcaaagtgttaagggaagtcatgtgagtgcatannnnnnnnnnnnataagtattgttttgatgttatttcaaaattataatttgatgtataag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
61070 |
agatgcatcaaagtgttaagggaagtcatgtgagtgcatatttttttttt--acaagtattgttttaatgttatttcaaaattataatttgatgtataag |
60973 |
T |
|
| Q |
115 |
atgtatttatctacattatggacataatgcaaaagactgaaagagattagctcatcttataaatagattgaatgcatttggtagaccgatttctagtaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60972 |
atgtatttatctacattatggacataatgcaaaagactgaaagagattaactcatcttataaatagattgaatgcatttggtagaccgatttctagtaaa |
60873 |
T |
|
| Q |
215 |
gtttcttctaataaaatcatg |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
60872 |
gtttcttctaataaaatcatg |
60852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 68402 - 68184
Alignment:
| Q |
15 |
agatgcatcaaagtgttaagggaagtcatgtgagtgcatannnnnnnnnnnnataagtattgttttgatgttatttcaaaattataatttgatgtataag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
68402 |
agatgcatcaaagtgttaagggaagtcatgtgagtgcatatttttttttt--acaagtattgttttaatgttatttcaaaattataatttgatgtataag |
68305 |
T |
|
| Q |
115 |
atgtatttatctacattatggacataatgcaaaagactgaaagagattagctcatcttataaatagattgaatgcatttggtagaccgatttctagtaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
68304 |
atgtatttatctacattatggacataatgcaaaagactgaaagagattaactcatcttataaatagattgaatgcatttggtagaccgatttctagtaaa |
68205 |
T |
|
| Q |
215 |
gtttcttctaataaaatcatg |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
68204 |
gtttcttctaataaaatcatg |
68184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University