View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13150_low_6 (Length: 504)
Name: NF13150_low_6
Description: NF13150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13150_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 225 - 487
Target Start/End: Original strand, 18408520 - 18408780
Alignment:
| Q |
225 |
aaaactaactatggctgcaattgcatacaagaattcaacttatatttttcatatggccgtaaaccatcacatttgcttcaattcctttttgcaactgaaa |
324 |
Q |
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| T |
18408520 |
aaaactaactatggctgcaattgcatacaagaattcaacttatatttttcatatggccgtaaaccatcacatttgcttcaattcctttttgcaactgaaa |
18408619 |
T |
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| Q |
325 |
tacacaaacttagttcaacttatgnnnnnnngtttgtttgaagaattcaacttatgataaagatataagtttatgactcttatgaagaccttgttagttt |
424 |
Q |
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| T |
18408620 |
tacacaaacttagttcaacttat--ttttttttttgtttgaagaattcaacttatgataaagatataagtttatgactcttataaagaccttgttagttt |
18408717 |
T |
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| Q |
425 |
gttctccaataacaaaaatacctttgtctggtgaaattgttcctgtaatgtgtgacataaatc |
487 |
Q |
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| T |
18408718 |
gttatccaataacaaaaatacctttgtctagtgaaattgttcctgtaatgtgtgacataaatc |
18408780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 18408036 - 18408195
Alignment:
| Q |
15 |
tattgtccaaacaatgaatagcatatactacaaaagtacatgggacatctcaattatataaagttgggtccccgaatgtgtggttaggaaacaatggtat |
114 |
Q |
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| T |
18408036 |
tattgtccaaacaatgatttgtatatactacaaaagtacatgggacagcttaattata--aagttgggtccctgaatgtgtggtaaggaaacaatggtat |
18408133 |
T |
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| Q |
115 |
gcacaatactcttttataaggtacatgtacgtctatattgtctacacactttcgatgtggga |
176 |
Q |
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| T |
18408134 |
gcacaatactcttttataaggtacatgtatgtctatattgtctacacactttcgatgtggga |
18408195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 18429106 - 18429166
Alignment:
| Q |
116 |
cacaatactcttttataaggtacatgtacgtctatattgtctacacactttcgatgtgggac |
177 |
Q |
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| T |
18429106 |
cacaatcctgttttata-ggtacatgtttgtctatattgtttacacactttcgatgtgggac |
18429166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 18427185 - 18427231
Alignment:
| Q |
133 |
aggtacatgtacgtctatattgtctacacactttcgatgtgggactt |
179 |
Q |
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| T |
18427185 |
aggtacatgtatgttcatgttgtctacacactttcgatgtgggactt |
18427231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 18409981 - 18410041
Alignment:
| Q |
116 |
cacaatactcttttataaggtacatgtacgtctatattgtctacacactttcgatgtgggac |
177 |
Q |
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| T |
18409981 |
cacaatcctgttttata-ggtacatgtttgtctatgttgtttacacactttcgatgtgggac |
18410041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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