View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13151_low_3 (Length: 209)
Name: NF13151_low_3
Description: NF13151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13151_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6861412 - 6861269
Alignment:
| Q |
1 |
ttttgagctagaattagaactagaaccacatatgttaataaagttctacaatgaaccttcattgttgcaatgtgcaatgatccctactgctttaaacatg |
100 |
Q |
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| T |
6861412 |
ttttgagctagaattagaactagaaccacatatgttaataaagttctacaatgaaccttcattgttgcagtgtgcaatgatccctactgctttaaacatg |
6861313 |
T |
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| Q |
101 |
aatccagaaatcgaccagcttcaca--tgagacctccgtcaacc |
142 |
Q |
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| T |
6861312 |
aatccagaaatcgaccagcttcgcatgtgagacctccgtcaacc |
6861269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 6872119 - 6871975
Alignment:
| Q |
2 |
tttgagctagaattagaactagaacca--catatgttaataaagttctacaatgaaccttcattgttgcaatgtgcaatgatccctactgctttaaacat |
99 |
Q |
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| T |
6872119 |
tttgagctaaaattagaactagacctctgcatatgttactaaagttctacaatgaaccttcattgttgcaaggtgcaatgatccctactgctttaaacat |
6872020 |
T |
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| Q |
100 |
gaatccagaaatcgaccagcttcaca--tgagacctccgtcaacc |
142 |
Q |
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| T |
6872019 |
gaatccagaaatcgaccagcttcgcatgtgagacctccgtcaacc |
6871975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 6861222 - 6861151
Alignment:
| Q |
138 |
caacctggagtggatcacattatgggtgtgcctgtgtctgttagagaagatcagagaatttggaagatagaa |
209 |
Q |
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| T |
6861222 |
caacctggagtggatcacattatgtgtgtgcctgtgtctgttagagaggatcagagaatttggaagatagaa |
6861151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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