View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13152_low_1 (Length: 575)
Name: NF13152_low_1
Description: NF13152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13152_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 39469457 - 39470009
Alignment:
| Q |
1 |
ttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctggaatctctccagagagtgaattggatgatacatccaaccattgcaatggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39469457 |
ttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctggaatctctccagagagtgaattggatgatacatccaaccattgcaatggtg |
39469556 |
T |
|
| Q |
101 |
aattcttgccgaggttactaggcaatggacctgataatgaattgttccatagctcaaaaacctccaattgaggcaaatttccaagtccagaaggaacaaa |
200 |
Q |
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| T |
39469557 |
aattctcgccgaggttactaggcaatggacctgataatgaattgttccatagctcaaaaacctccaattgaggcaaatttccaagtccagaaggaacaaa |
39469656 |
T |
|
| Q |
201 |
accagataactggtttcccatgaagttcagaagcttcaaattcttcagaagactcatttcatctggaatttttcctgacaaattgttatcagaaagatct |
300 |
Q |
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| T |
39469657 |
accagataactggtttcccatgaagttcagaagcttcaaattcttcagaagactcatttcatctggaatttttcctgacaaattgttatcagaaagatct |
39469756 |
T |
|
| Q |
301 |
aaaaactgcaaagaagtaatgttaccaatttgtgatggaattcttccttcaagattgttgttgtataagaaaagtgtatccaataacttgagatttccta |
400 |
Q |
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| T |
39469757 |
aaaaactgcaaagaagtaatgttaccaatttgtgaaggaattcttccttcaagattgttgttgtataagaaaagtgtatccaataacttgagatttccta |
39469856 |
T |
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| Q |
401 |
attcttctggaatctcaccaccaagatttgctactgctaaatcaagatacttaagactagtgagatttccaaattctgctggaatctcaccttcgaattc |
500 |
Q |
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| T |
39469857 |
attcctctggaatctcaccaccaagatttgctactgctaaatcaagatacttaagactagtgagatttccaaattctgctggaatctcaccttcgaattc |
39469956 |
T |
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| Q |
501 |
gttatatccaagaatcatatattccaatgatgaaagatttccaatctcaccag |
553 |
Q |
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| T |
39469957 |
gttatatccaagaatcatatattccaatgatgaaagatttccaagctcaccag |
39470009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 30088494 - 30087946
Alignment:
| Q |
1 |
ttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctggaatctctccagagagtgaattggatgatacatccaaccattgcaatggtg |
100 |
Q |
| |
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||||||||||| |||||||| ||||| ||||| ||||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||| || | |
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| T |
30088494 |
ttgaaaagtataagcttggtgagatttcccttagtgcaaagagtttcaggaatctcgccggagagtgaattggacgatacatccaaccactgcagcggcg |
30088395 |
T |
|
| Q |
101 |
aattcttgccgaggttactaggcaatggacctgataatgaattgttccatagctcaaaaacctccaattgaggcaaatttccaagtccagaaggaacaaa |
200 |
Q |
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||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||| ||||| | ||||||||||| |||||| |||||||| ||| |
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| T |
30088394 |
aattcttgccgaggtctctaggcaatggccctgacaaagaattgttccatagctcaagcacctctagttgaggcaaatctccaaggccagaaggtacagg |
30088295 |
T |
|
| Q |
201 |
accagataactggtttcccatgaagttcagaagcttcaaattcttcagaagactcatttcatctggaatttttcctgacaaattgttatcagaaagatct |
300 |
Q |
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|||||||| || ||| | ||| ||||||||||||| ||||||||| || |||| |||||| ||||||| |||||||| || |||| || || ||||| |
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| T |
30088294 |
accagatagcttgttcctcataaagttcagaagctgcaaattctttagctgacttatttcagctggaatatttcctgataacatgttgtctgagagatca |
30088195 |
T |
|
| Q |
301 |
aaaaactgcaaagaagtaatgttaccaatttgtgatggaattcttccttcaagattgttgttgtataagaaaagtgtatccaataacttgagatttccta |
400 |
Q |
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| | | ||| ||||| ||||| ||||| | || |||||| | ||||||| | |||| ||||||||||||| ||| | |||||||||||| ||||| | |
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| T |
30088194 |
agcagcaccaatgaagtcatgtttccaatatttgttggaatcttgccttcaaaactgttcttgtataagaaaactgtgttcaataacttgagttttccca |
30088095 |
T |
|
| Q |
401 |
attcttctggaatctcaccaccaagatttgctactgctaaatcaagatacttaagactagtgagatttccaaattctgctggaatctcaccttcgaattc |
500 |
Q |
| |
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| || || ||||| |||||||||| ||| || ||||||||||||||||||| || | || | |||||| || ||| ||||| ||||||| ||||| |
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| T |
30088094 |
actcatcaggaatttcaccaccaacattgccttctgctaaatcaagatacttcagcttggttaaatttccgaactctttcggaattccaccttcaaattc |
30087995 |
T |
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| Q |
501 |
gttatatccaagaatcatatattccaatgatgaaagatttccaatctca |
549 |
Q |
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| T |
30087994 |
gttataaccgatgatcatatactccagcgacgaaagtttaccaatctca |
30087946 |
T |
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