View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13152_low_2 (Length: 564)
Name: NF13152_low_2
Description: NF13152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13152_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 36 - 544
Target Start/End: Original strand, 1536615 - 1537123
Alignment:
| Q |
36 |
ttcagaccccattgcacttgggtggaagtgtcacgcagacttgaggattattatatggcacaggcggcaggttccataattagctacagacataggcagc |
135 |
Q |
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| T |
1536615 |
ttcagaccccattgcacttgggtggaagtgtcacgcagacttgaggattattatatggcacaggcggcaggttccataattagctacagacataggcagc |
1536714 |
T |
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| Q |
136 |
ctattcgaattgattgggatccgcctaaatcgggcaggtttaaatgaaacaccgatatagcagagtccctgttgccgtgggatgtggaggactatttcgt |
235 |
Q |
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| T |
1536715 |
ctattcgaattgattgggatccgcctaaatcgggcaggtttaaattaaacaccgatatagcagagtccctgttgccgtgggatgtggaggactatttcgt |
1536814 |
T |
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| Q |
236 |
ggtaccgatggacaatggctcggttgttattccgaaggtcttgactctaatgaaaatattaatgtcaagtatgatgataaatgttgtttaagatttactg |
335 |
Q |
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| T |
1536815 |
ggtaccgatggacaatggctcggttgttattccgaaggtcttgactctgatgaaaatattaatgtcaagtatgatgataaatgttgtttaagatttactg |
1536914 |
T |
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| Q |
336 |
gagtaggttatttaatcactggaagctggtggtgagttgaagatgctgtctaagtttgaatttggaagagtataatagtgtctaaaatgcctctaaatga |
435 |
Q |
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| T |
1536915 |
gagtaggttatttaatcactggaagctggtggtgagttgaagatgctgtctaagtttgaatttggaagagtataatagtgtctaaaatgcctctaaatga |
1537014 |
T |
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| Q |
436 |
acttaggatcattgaagaattggacttggattttaattttgctcaagacttgatgatgagcttgatatgaattaattcattccaagtgaatgtggttgga |
535 |
Q |
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| T |
1537015 |
acttaggatcattgaagaattggacttggattttaattttgctcaagacttgatgatgagcttgatatgaattaattcattccaagtgaatgtggttgga |
1537114 |
T |
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| Q |
536 |
aaatgctga |
544 |
Q |
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| T |
1537115 |
aaatgctga |
1537123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 441 - 544
Target Start/End: Original strand, 1532500 - 1532603
Alignment:
| Q |
441 |
ggatcattgaagaattggacttggattttaattttgctcaagacttgatgatgagcttgatatgaattaattcattcc-aagtgaatgtggttggaaaat |
539 |
Q |
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| T |
1532500 |
ggatcattgaagc-ttggacttgaattttagttttgctcaagacttgatgatgagcttgatatgaattaattcattcctaagtgaatgtggttggaaaat |
1532598 |
T |
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| Q |
540 |
gctga |
544 |
Q |
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||||| |
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| T |
1532599 |
gctga |
1532603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 1532324 - 1532417
Alignment:
| Q |
412 |
agtgtctaaaatgcctctaaatgaacttaggatcattgaagaattggacttggattttaattttgctcaagacttgatgatgagcttgatatga |
505 |
Q |
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| T |
1532324 |
agtgtctaaaatacctccgaatgaacttgagatcattgaagaattggacttgaattttaattttgctcaagacttgatgctgagcttgatatga |
1532417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 1532220 - 1532281
Alignment:
| Q |
267 |
ccgaaggtcttgactctaatgaaaatattaatgtcaagtatgatgataaatgttgtttaaga |
328 |
Q |
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| T |
1532220 |
ccgaaggtcttgactctaatgaaaatattaatgttaagtgtgataataaatattgtttaaga |
1532281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 3014625 - 3014727
Alignment:
| Q |
298 |
tgtcaagtatgatgataaatgttgttt-aagatttactggagtaggttatttaatcactggaagctggtggtgagttgaagatgctgtctaagtttgaat |
396 |
Q |
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| T |
3014625 |
tgtcaagtgtgataataaatgttgtttcaaggtttattggattagattatttaa-cacaggaagccagtgttgagttcaagatgctgtgtaactttgaac |
3014723 |
T |
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| Q |
397 |
ttgg |
400 |
Q |
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|||| |
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| T |
3014724 |
ttgg |
3014727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 26414035 - 26414127
Alignment:
| Q |
71 |
cagacttgaggattattatatggcacaggcggcaggttccataattagctacagacataggcagcctattcgaattgattgggatccgcctaaa |
164 |
Q |
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| T |
26414035 |
cagacttgaggattatcgtatggcacaggctgcaggttctataattagctatggacata-gcagcagattcggattgtctgggatctgcctaaa |
26414127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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