View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13152_low_3 (Length: 490)
Name: NF13152_low_3
Description: NF13152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13152_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 397
Target Start/End: Original strand, 41649526 - 41649898
Alignment:
| Q |
25 |
tggttagagtttagattcattcatgtgtatggaaaaatttgaatgaaattttcattcttctacaaatattaattattgataaatggttgttgaagcttcg |
124 |
Q |
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| T |
41649526 |
tggttagagtttagattcattcatgtgtatggaaaaatttgaatgaaattttcattcttctacaaatattaattattgataaatggttgttgaagcttcg |
41649625 |
T |
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| Q |
125 |
tacaaatatcatgataacaannnnnnnnnnnnnnnnngagattatttcaatggacggtacctgtgtctttatttacaaatcatttgtttttattagatat |
224 |
Q |
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| T |
41649626 |
tacaaatatcatgataacaaattatattttttttt--gagattatttcaattgacggtacctgtgtctttatttacaaatcatttgtttttattagatat |
41649723 |
T |
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| Q |
225 |
aacattttttagaaaaatttggtactaccaccaatcctactagctactaccacctgc--tactgtccactgcttaaatatagtaacatctagtgagcaat |
322 |
Q |
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| T |
41649724 |
aacatttttttttaaaatttggtactaccaccaatcctactagctactaccacctgcgctactgtccactgcttatatatagtaacatctagtgagcaat |
41649823 |
T |
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| Q |
323 |
gaatatgcgttgttccatttgatttaacttcttttctttcttttccatttcccaccttaacactttgaatgcatg |
397 |
Q |
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| T |
41649824 |
gaatatgcgttgttccatttgatttaacttcttttttttcttttccatttcccaccttaacactttgaatgcatg |
41649898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 252 - 397
Target Start/End: Complemental strand, 43228404 - 43228260
Alignment:
| Q |
252 |
ccaccaatcctactag-ctactaccacctgctactgtccactgcttaaatatagtaaca-tctagtgagcaatgaatatgcgttgttccatttgatttaa |
349 |
Q |
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| T |
43228404 |
ccaccaatcctaccaggctactaccacttgctactgtccactgcata--tatagtaacaatctagt-agcaatgaacatgtgttgttccattagatttaa |
43228308 |
T |
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| Q |
350 |
cttcttttctttcttttccatttcccaccttaacactttgaatgcatg |
397 |
Q |
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| T |
43228307 |
cttcttttctttcttttccatttctcagttcaacactttgaatgcatg |
43228260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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