View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13152_low_4 (Length: 360)
Name: NF13152_low_4
Description: NF13152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13152_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 35548799 - 35548587
Alignment:
| Q |
17 |
agataggagtaaaaaagttaagctttcgaagtaaaagaaataaccatggcttcttcaatctctacacagtcaggtatgttttatgagaattagaatttta |
116 |
Q |
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| T |
35548799 |
agataggagtaaaaaagttaagctttcgaaataaaagaaataaccatggcttcttcaatctctacacagtcaggtatgttttatgagaattagaatttta |
35548700 |
T |
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| Q |
117 |
tgaaaaagttagcatgctctattactttattatagttattgatgagaatcatgcatggaatctttaaggtattacgatgattattttgatctatgtgtat |
216 |
Q |
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| T |
35548699 |
tgaaaaagttagcatgctctattactttattatagttattgatgagaatcatgcatggaatctttaaggtattacgatgattattttgatctatgtgtat |
35548600 |
T |
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| Q |
217 |
acaattgtaaata |
229 |
Q |
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| T |
35548599 |
acaattgtaaata |
35548587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 35548525 - 35548472
Alignment:
| Q |
291 |
cagaaccatcatgttactattatggattgcatgcacattaccaagagcaatatg |
344 |
Q |
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| T |
35548525 |
cagaaccatcatgttactattatggattgcatgcacattaccaagagcagtatg |
35548472 |
T |
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