View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13153_high_2 (Length: 356)
Name: NF13153_high_2
Description: NF13153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13153_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 32230981 - 32231102
Alignment:
| Q |
49 |
catattatagaaagtatgatcaccaattaaattagcatttcattttgcaaattgttaaatatatcatctaaattataaaatgtcacttaaaatggtctca |
148 |
Q |
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| T |
32230981 |
catattatagaaagtatgatcaccaattaaattagcatttcattttgcaaattgttaaatatatcatctaaattataaaatgtcacttaaaatggtctca |
32231080 |
T |
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| Q |
149 |
atttgttgagaataatatacct |
170 |
Q |
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| T |
32231081 |
gtttgttgagaataatatacct |
32231102 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 32231226 - 32231273
Alignment:
| Q |
294 |
gttttcaaattacacaactgagttttatttatagagatgaataaaagt |
341 |
Q |
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| T |
32231226 |
gttttcaaattacacaactgagttttatatatagagatgaataaaagt |
32231273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 32230908 - 32230940
Alignment:
| Q |
11 |
caaagggcacaatatttgacatcaaagttttaa |
43 |
Q |
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| T |
32230908 |
caaagggcacaatatttgacatcaaagttttaa |
32230940 |
T |
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