View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13153_low_1 (Length: 467)

Name: NF13153_low_1
Description: NF13153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13153_low_1
NF13153_low_1
[»] chr2 (7 HSPs)
chr2 (102-460)||(43224056-43224409)
chr2 (12-460)||(41649937-41650397)
chr2 (133-460)||(41654489-41654816)
chr2 (19-460)||(43227769-43228225)
chr2 (133-378)||(43213347-43213592)
chr2 (134-460)||(43206374-43206709)
chr2 (402-459)||(43213628-43213685)
[»] chr8 (2 HSPs)
chr8 (145-354)||(5073627-5073836)
chr8 (33-69)||(13267906-13267942)
[»] scaffold0633 (1 HSPs)
scaffold0633 (33-69)||(8943-8979)
[»] chr1 (1 HSPs)
chr1 (33-69)||(41666250-41666286)
[»] chr4 (2 HSPs)
chr4 (33-72)||(43365909-43365948)
chr4 (35-65)||(49888328-49888358)
[»] chr3 (2 HSPs)
chr3 (36-65)||(25189514-25189543)
chr3 (36-65)||(39450803-39450832)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 102 - 460
Target Start/End: Original strand, 43224056 - 43224409
Alignment:
Q  102 aaaccagaacactcaggaaaaaatgtagacatacctgcatgagaagagaatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgta 201  Q
    |||||| ||||||||| |||||||||||||    |||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  43224056 aaaccaaaacactcag-aaaaaatgtagac----ctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgta 43224150  T
Q  202 accaataacacctgtcactgcaactggatgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataacca 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43224151 accaataacacctgtcactgcaactggatgtttatattgaacacctaattcatccaattctgttcttataagcttactggtctcaaattcctcataacca 43224250  T
Q  302 agttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattgcgtttgaac 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43224251 agttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattgcgtttgaac 43224350  T
Q  402 tggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgatg 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43224351 tggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgatg 43224409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 460
Target Start/End: Complemental strand, 41650397 - 41649937
Alignment:
Q  12 atgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccagaac 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  41650397 atgaacgtcaataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaacccataattggaaaccaaaac 41650298  T
Q  112 actcaggaaaaaatgtagacatacctgcatgagaagagaatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca 211  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650297 actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca 41650198  T
Q  212 cctgtcactgcaactggatgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggat 311  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||| ||||| |||||||||||| || | |||||| | |||||  ||||||||||    
T  41650197 cctgtcactgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattcttgataactcagttcaggat 41650098  T
Q  312 tctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaa-- 400  Q
    |||||||||| || |||||||||||||||||  |||||||||||||||||||||||| ||| |  || || || |||||||         | ||||||      
T  41650097 tctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagt 41649998  T
Q  401 -ctggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgatg 460  Q
      ||||||| |||||||||||||||||||| |||||| ||||| ||||||| |||||||||    
T  41649997 ggtggaggaggaatctgagaagattggtgttgcagatgaaaagaaaatgaaaatgatgatg 41649937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 133 - 460
Target Start/End: Complemental strand, 41654816 - 41654489
Alignment:
Q  133 tacctgcatgagaagagaatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 232  Q
    ||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41654816 tacctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 41654717  T
Q  233 ttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctcctta 332  Q
    ||||||  |||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41654716 ttatatgtaacacccaattcatccaattttgttcttataagcttactggtctcaaattcttcataaccaagttcaggattctcatgaatcttcctcctta 41654617  T
Q  333 tatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggtgtagc 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  41654616 tatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaagttggggattgcatttgaactggtggaagagtctgagaagattggtgtagc 41654517  T
Q  433 agataaaaaggaaatgaacatgatgatg 460  Q
    |||||||||||||||||| |||| ||||    
T  41654516 agataaaaaggaaatgaaaatgacgatg 41654489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 43227769 - 43228225
Alignment:
Q  19 tcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccagaacactca-g 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||| |||| || || |||| | |||||||| |    
T  43227769 tcgataaaattgttagaaaattctcttgaaaacttcatttaaaacatgtgatatagaaaaccaagataaaa-tccacaactgaaaactaaaacactcaag 43227867  T
Q  118 gaaaaaatgtagacatacctgcatgagaagagaatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtc 217  Q
    |||||||   |  || |||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  43227868 gaaaaaaaaaatgcagacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgta 43227967  T
Q  218 actgcaactggatgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcat 317  Q
    ||||||||||||||||||||||||||||  || |||||||||| |||||||||||||||||| ||||||||||| | |||||  ||||||||||||||||    
T  43227968 actgcaactggatgtttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcat 43228067  T
Q  318 gaatcttcctccttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaactgg---- 404  Q
    |||| || |||||||||  ||||||||| |||||||||| ||| || || ||||| || || || || |||||||         | |||||| |||        
T  43228068 gaatttttctccttatagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggtgga 43228167  T
Q  405 --aggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgatg 460  Q
      |||| |||||||||||||||| ||| |||||||||||| ||||||| |||||||||    
T  43228168 ggaggaggaatctgagaagattgatgttgcagataaaaagaaaatgaaaatgatgatg 43228225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 133 - 378
Target Start/End: Original strand, 43213347 - 43213592
Alignment:
Q  133 tacctgcatgagaagagaatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 232  Q
    ||||||||| ||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43213347 tacctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgt 43213446  T
Q  233 ttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctcctta 332  Q
    |||||| | |||| ||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  43213447 ttatatgggacacctaattcatctaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctcctta 43213546  T
Q  333 tatcaaccatccaatcaaaaacttgaggttccttggctaattccag 378  Q
    |||||||||||||||||||||||||||| || ||||||||||||||    
T  43213547 tatcaaccatccaatcaaaaacttgaggctctttggctaattccag 43213592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 134 - 460
Target Start/End: Original strand, 43206374 - 43206709
Alignment:
Q  134 acctgcatgagaagagaatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt 233  Q
    ||||| || ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43206374 acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 43206473  T
Q  234 tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat 333  Q
    ||||||||||||  || |||||||||| |||||||||||||||||| ||||||||||| | |||||  |||||||||||||||||||| || ||||||||    
T  43206474 tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctccttat 43206573  T
Q  334 atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaactggaggaagaatctgagaagatt 424  Q
    |  ||||||||| |||||||||| ||| || || ||||| || || || || |||||||         | |||||| |||| ||  | |||||||||| |    
T  43206574 agaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggaagagaagtctgagaagact 43206673  T
Q  425 ggtgtagcagataaaaaggaaatgaacatgatgatg 460  Q
    ||||| ||||| |||||| ||||||| |||||||||    
T  43206674 ggtgttgcagagaaaaagaaaatgaaaatgatgatg 43206709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 43213628 - 43213685
Alignment:
Q  402 tggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgat 459  Q
    ||||||| ||||||||||| || ||||| ||| |||||||| ||||||| ||||||||    
T  43213628 tggaggaggaatctgagaaaataggtgttgcacataaaaagaaaatgaaaatgatgat 43213685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 354
Target Start/End: Original strand, 5073627 - 5073836
Alignment:
Q  145 aagagaatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttatattgaaca 244  Q
    ||||| ||||||||||||||| | ||| ||||||||||  |  |||||||||||| ||||||| ||||| || | ||||||||||| ||||||  ||| |    
T  5073627 aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttatagggaata 5073726  T
Q  245 cttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatcc 344  Q
    || | || |||||||||||||||||| |  | ||| |||||||||||||||||||| | ||| |||||||||||||| ||||| || ||||  | |||||    
T  5073727 ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgatattgatcatcc 5073826  T
Q  345 aatcaaaaac 354  Q
    ||||| ||||    
T  5073827 aatcataaac 5073836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 13267942 - 13267906
Alignment:
Q  33 agaaaattctcttgaaaacttcatttaaaacatgtta 69  Q
    |||||||||  ||||||||||||||||||||||||||    
T  13267942 agaaaattcctttgaaaacttcatttaaaacatgtta 13267906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 8979 - 8943
Alignment:
Q  33 agaaaattctcttgaaaacttcatttaaaacatgtta 69  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8979 agaaaattttcttgaaaacttcatttaaaacatgtta 8943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 41666250 - 41666286
Alignment:
Q  33 agaaaattctcttgaaaacttcatttaaaacatgtta 69  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41666250 agaaaattttcttgaaaacttcatttaaaacatgtta 41666286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 43365948 - 43365909
Alignment:
Q  33 agaaaattctcttgaaaacttcatttaaaacatgttacat 72  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  43365948 agaaaattcccttaaaaacttcatttaaaacatgttacat 43365909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 49888328 - 49888358
Alignment:
Q  35 aaaattctcttgaaaacttcatttaaaacat 65  Q
    |||||||||||||||||||||||||||||||    
T  49888328 aaaattctcttgaaaacttcatttaaaacat 49888358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 25189543 - 25189514
Alignment:
Q  36 aaattctcttgaaaacttcatttaaaacat 65  Q
    ||||||||||||||||||||||||||||||    
T  25189543 aaattctcttgaaaacttcatttaaaacat 25189514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 39450803 - 39450832
Alignment:
Q  36 aaattctcttgaaaacttcatttaaaacat 65  Q
    ||||||||||||||||||||||||||||||    
T  39450803 aaattctcttgaaaacttcatttaaaacat 39450832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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