View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13154_high_1 (Length: 692)

Name: NF13154_high_1
Description: NF13154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13154_high_1
NF13154_high_1
[»] chr6 (22 HSPs)
chr6 (371-474)||(30943760-30943863)
chr6 (347-472)||(30954205-30954332)
chr6 (381-465)||(31222979-31223063)
chr6 (398-474)||(30959862-30959938)
chr6 (544-584)||(30943646-30943686)
chr6 (429-472)||(31213424-31213467)
chr6 (1-35)||(18141314-18141348)
chr6 (1-35)||(20822881-20822915)
chr6 (206-268)||(30954401-30954463)
chr6 (1-35)||(32459530-32459564)
chr6 (1-37)||(8645330-8645366)
chr6 (1-37)||(33712342-33712378)
chr6 (231-286)||(30943957-30944012)
chr6 (1-31)||(8505787-8505817)
chr6 (1-31)||(11635548-11635578)
chr6 (92-174)||(30944054-30944136)
chr6 (1-35)||(34442076-34442110)
chr6 (419-472)||(31229037-31229090)
chr6 (1-37)||(18065103-18065139)
chr6 (1-29)||(25811852-25811880)
chr6 (1-29)||(31869096-31869124)
chr6 (1-29)||(34047416-34047444)
[»] chr5 (14 HSPs)
chr5 (1-35)||(6517736-6517770)
chr5 (1-37)||(611886-611922)
chr5 (1-35)||(189716-189750)
chr5 (1-31)||(8920106-8920136)
chr5 (1-35)||(10649459-10649493)
chr5 (1-35)||(19481195-19481229)
chr5 (1-35)||(19839999-19840033)
chr5 (1-31)||(20770159-20770189)
chr5 (1-30)||(6446531-6446560)
chr5 (1-29)||(14321968-14321996)
chr5 (1-29)||(18695348-18695376)
chr5 (1-29)||(22098285-22098313)
chr5 (1-29)||(26791258-26791286)
chr5 (1-29)||(39628819-39628847)
[»] chr4 (21 HSPs)
chr4 (1-35)||(30170033-30170067)
chr4 (1-37)||(5932777-5932813)
chr4 (1-40)||(56557752-56557791)
chr4 (1-35)||(5249892-5249926)
chr4 (1-31)||(28458390-28458420)
chr4 (1-31)||(32012924-32012954)
chr4 (1-31)||(37060345-37060375)
chr4 (1-35)||(38338935-38338969)
chr4 (1-31)||(50890087-50890117)
chr4 (1-31)||(51255774-51255804)
chr4 (1-29)||(2268521-2268549)
chr4 (1-29)||(3078921-3078949)
chr4 (1-29)||(10250529-10250557)
chr4 (1-29)||(18882988-18883016)
chr4 (1-37)||(36130366-36130402)
chr4 (1-29)||(37514145-37514173)
chr4 (1-29)||(39478464-39478492)
chr4 (1-29)||(42815434-42815462)
chr4 (1-37)||(51577636-51577672)
chr4 (1-29)||(51734646-51734674)
chr4 (1-29)||(55609179-55609207)
[»] chr3 (30 HSPs)
chr3 (1-35)||(10811159-10811193)
chr3 (1-35)||(49417599-49417633)
chr3 (1-35)||(55400023-55400057)
chr3 (1-32)||(49167777-49167808)
chr3 (1-31)||(21195904-21195934)
chr3 (1-35)||(34057966-34058000)
chr3 (1-31)||(37927218-37927248)
chr3 (1-30)||(46019491-46019520)
chr3 (1-29)||(5244258-5244286)
chr3 (1-29)||(14207271-14207299)
chr3 (1-29)||(14215019-14215047)
chr3 (1-29)||(16479661-16479689)
chr3 (1-29)||(19150332-19150360)
chr3 (1-29)||(23553790-23553818)
chr3 (1-29)||(26014841-26014869)
chr3 (1-29)||(27718799-27718827)
chr3 (1-29)||(29573369-29573397)
chr3 (1-29)||(29917037-29917065)
chr3 (1-29)||(29966190-29966218)
chr3 (1-37)||(34456812-34456848)
chr3 (1-29)||(34592093-34592121)
chr3 (1-29)||(37302575-37302603)
chr3 (1-29)||(37894256-37894284)
chr3 (1-29)||(41505520-41505548)
chr3 (1-29)||(44413934-44413962)
chr3 (1-29)||(44963832-44963860)
chr3 (1-29)||(45293042-45293070)
chr3 (1-29)||(47472358-47472386)
chr3 (1-29)||(48353026-48353054)
chr3 (1-29)||(52326048-52326076)
[»] chr2 (18 HSPs)
chr2 (1-35)||(2563728-2563762)
chr2 (1-35)||(6170654-6170688)
chr2 (1-35)||(6999081-6999115)
chr2 (1-35)||(13765424-13765458)
chr2 (1-37)||(37316828-37316864)
chr2 (1-31)||(14876985-14877015)
chr2 (1-35)||(44050039-44050073)
chr2 (2-31)||(8848710-8848739)
chr2 (2-31)||(27490745-27490774)
chr2 (1-30)||(28245757-28245786)
chr2 (1-29)||(6336282-6336310)
chr2 (1-29)||(9207619-9207647)
chr2 (1-37)||(11965815-11965851)
chr2 (1-29)||(18254223-18254251)
chr2 (1-29)||(18737887-18737915)
chr2 (1-29)||(19843514-19843542)
chr2 (1-37)||(23690523-23690559)
chr2 (1-37)||(37731213-37731249)
[»] chr1 (27 HSPs)
chr1 (1-35)||(10890059-10890093)
chr1 (1-35)||(11947819-11947853)
chr1 (1-35)||(13489686-13489720)
chr1 (1-35)||(15705075-15705109)
chr1 (1-35)||(32915085-32915119)
chr1 (1-35)||(47214232-47214266)
chr1 (1-35)||(51286380-51286414)
chr1 (1-35)||(52362506-52362540)
chr1 (1-37)||(17082756-17082792)
chr1 (1-37)||(24806235-24806271)
chr1 (1-37)||(27742639-27742675)
chr1 (1-37)||(48858845-48858881)
chr1 (1-31)||(9566974-9567004)
chr1 (2-32)||(26967237-26967267)
chr1 (1-35)||(34008204-34008238)
chr1 (1-31)||(48983681-48983711)
chr1 (2-31)||(18434822-18434851)
chr1 (1-29)||(649798-649826)
chr1 (1-29)||(3982045-3982073)
chr1 (1-29)||(8350210-8350238)
chr1 (1-29)||(27465071-27465099)
chr1 (1-29)||(37685360-37685388)
chr1 (1-29)||(37700130-37700158)
chr1 (1-29)||(45333599-45333627)
chr1 (1-29)||(49559212-49559240)
chr1 (1-29)||(49570026-49570054)
chr1 (1-29)||(49931583-49931611)
[»] scaffold0128 (1 HSPs)
scaffold0128 (1-37)||(10958-10994)
[»] chr8 (18 HSPs)
chr8 (1-37)||(1068628-1068664)
chr8 (1-31)||(3946268-3946298)
chr8 (1-35)||(4658276-4658310)
chr8 (1-35)||(12707173-12707207)
chr8 (1-35)||(12735025-12735059)
chr8 (1-35)||(33100482-33100516)
chr8 (1-31)||(33451576-33451606)
chr8 (1-31)||(41600337-41600367)
chr8 (1-30)||(41159902-41159931)
chr8 (1-29)||(67174-67202)
chr8 (1-37)||(2730974-2731010)
chr8 (1-29)||(6440111-6440139)
chr8 (1-29)||(10644815-10644843)
chr8 (1-29)||(13970949-13970977)
chr8 (1-29)||(25830259-25830287)
chr8 (1-29)||(27325787-27325815)
chr8 (1-37)||(34435750-34435786)
chr8 (1-29)||(35067190-35067218)
[»] chr7 (14 HSPs)
chr7 (1-37)||(2008871-2008907)
chr7 (1-31)||(12007199-12007229)
chr7 (1-31)||(13152620-13152650)
chr7 (1-35)||(35586786-35586820)
chr7 (1-35)||(41893939-41893973)
chr7 (1-31)||(47448854-47448884)
chr7 (2-31)||(15325652-15325681)
chr7 (1-30)||(44184572-44184601)
chr7 (1-29)||(1471304-1471332)
chr7 (1-29)||(21204359-21204387)
chr7 (1-29)||(30941415-30941443)
chr7 (1-37)||(33845064-33845100)
chr7 (1-37)||(34978318-34978354)
chr7 (1-29)||(42584832-42584860)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-35)||(38449-38483)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-31)||(101919-101949)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-30)||(10993-11022)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-37)||(28340-28376)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-29)||(366323-366351)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 371 - 474
Target Start/End: Complemental strand, 30943863 - 30943760
Alignment:
Q  371 aatagttaaagagagaaacataataggaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctgcgata 470  Q
    |||||| |||| |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30943863 aatagtaaaagggagaaatacaatagaaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcagctgcttacctgcgata 30943764  T
Q  471 gttg 474  Q
    ||||    
T  30943763 gttg 30943760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 347 - 472
Target Start/End: Complemental strand, 30954332 - 30954205
Alignment:
Q  347 cgatcattactaaatat-cgaaaagaatagttaaagagagaaacataataggaaa-ttagattatagatgtatcacctagaatgattttcattttccctt 444  Q
    ||||||||||||||||| | |||  ||||||| ||| |||||| | | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30954332 cgatcattactaaatattccaaataaatagtttaagggagaaatacagtagaaaaattagattatagatgtatcacctagaatgattttcattttccctt 30954233  T
Q  445 tccagctcaactgcttacctgcgatagt 472  Q
     ||| ||||| |||||| ||||||||||    
T  30954232 gccaactcaaatgcttatctgcgatagt 30954205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 381 - 465
Target Start/End: Complemental strand, 31223063 - 31222979
Alignment:
Q  381 gagagaaacataataggaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctg 465  Q
    |||||||| | ||||| || ||| || ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  31223063 gagagaaataaaatagaaatttatatcatagatgtatcacctagaatgattttcattttcccttgcctgctcaactgcttacctg 31222979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 30959938 - 30959862
Alignment:
Q  398 aaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctgcgatagttg 474  Q
    |||||||| | ||| ||||| |||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||    
T  30959938 aaattagactgtagttgtattacctagaatgattttcattttcccttgccaactcatttgcttacctgcgatagttg 30959862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 30943686 - 30943646
Alignment:
Q  544 ctaataggtaagctgcatatgattggctaaagaagttggga 584  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30943686 ctaataggtaagctgcatatgattggctaaagaagttggga 30943646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 472
Target Start/End: Complemental strand, 31213467 - 31213424
Alignment:
Q  429 attttcattttccctttccagctcaactgcttacctgcgatagt 472  Q
    |||||||||||||||| ||||||||||| |||||||||||||||    
T  31213467 attttcattttcccttgccagctcaactccttacctgcgatagt 31213424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18141314 - 18141348
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18141314 atgagagagaaagttgtcacaaaagttgtcataaa 18141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20822881 - 20822915
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  20822881 atgagagagaaagttgtcacaaaagttgtcataaa 20822915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 30954463 - 30954401
Alignment:
Q  206 aaaagaaacagtcgaaactagtgtaatcaacataaatagacaaaagtttaggttttcattaat 268  Q
    |||||||| |||| |||||||||| ||||||||| || | |||||||| ||||||||||||||    
T  30954463 aaaagaaatagtccaaactagtgtgatcaacatagatggtcaaaagttgaggttttcattaat 30954401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32459530 - 32459564
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32459530 atgagagagaaagttgtcacaaaagttgtcataaa 32459564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8645366 - 8645330
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  8645366 atgagagagaaagttgtcacaaaagttgtcaaaaagt 8645330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33712378 - 33712342
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  33712378 atgagagagaaagttgtcacaaaagttgtcaaaaagt 33712342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 30944012 - 30943957
Alignment:
Q  231 atcaacataaatagacaaaagtttaggttttcattaatgatttatgataatgatag 286  Q
    |||||||||  |||||||||||| ||||| |||||||||  |||||||||||||||    
T  30944012 atcaacatagttagacaaaagttgaggttgtcattaatgtattatgataatgatag 30943957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8505787 - 8505817
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  8505787 atgagagagaaagttgtcacaaaagttgtca 8505817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 11635548 - 11635578
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  11635548 atgagagagaaagttgtcacaaaagttgtca 11635578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 30944136 - 30944054
Alignment:
Q  92 tttttattcacctacccatttattctgtgaaccactcatgtcttgtgccaaaggaaaacctaatcgtgatagtgcattcgtga 174  Q
    |||||||||||| | | || |||||||  | |||||||||| |||||||||||||| | ||||  |||| |||||||||||||    
T  30944136 tttttattcacccaacaatgtattctgccagccactcatgtattgtgccaaaggaagatctaacggtgacagtgcattcgtga 30944054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34442076 - 34442110
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  34442076 atgagagagaaaattgtcacaaaagttgtcataaa 34442110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 31229090 - 31229037
Alignment:
Q  419 acctagaatgattttcattttccctttccagctcaactgcttacctgcgatagt 472  Q
    |||| ||||||||||| ||||| ||| ||||||||| |||||||||| ||||||    
T  31229090 accttgaatgattttccttttctcttgccagctcaaatgcttacctgtgatagt 31229037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18065103 - 18065139
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    |||||||| |||||||||||||||||||||| |||||    
T  18065103 atgagagaaaaagttgtcacaaaagttgtcaaaaagt 18065139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25811852 - 25811880
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  25811852 atgagagagaaagttgtcacaaaagttgt 25811880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31869124 - 31869096
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  31869124 atgagagagaaagttgtcacaaaagttgt 31869096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34047444 - 34047416
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  34047444 atgagagagaaagttgtcacaaaagttgt 34047416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6517770 - 6517736
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6517770 atgagagagaaagttgtcacaaaagttgtcataaa 6517736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 611922 - 611886
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  611922 atgagagagaaagttgtcacaaaagttgtcaaaaagt 611886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 189716 - 189750
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  189716 atgagagagaaagttgtcacaaaagttatcataaa 189750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8920136 - 8920106
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  8920136 atgagagagaaagttgtcacaaaagttgtca 8920106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10649493 - 10649459
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  10649493 atgaaagagaaagttgtcacaaaagttgtcataaa 10649459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19481195 - 19481229
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  19481195 atgagagagaaagttgtcacaaaagttatcataaa 19481229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19839999 - 19840033
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  19839999 atgagagagaaagttgtcacaaaaattgtcataaa 19840033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 20770189 - 20770159
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  20770189 atgagagagaaagttgtcacaaaagttgtca 20770159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 6446531 - 6446560
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  6446531 atgagagagaaagttgtcacaaaagttgtc 6446560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14321968 - 14321996
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  14321968 atgagagagaaagttgtcacaaaagttgt 14321996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18695376 - 18695348
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  18695376 atgagagagaaagttgtcacaaaagttgt 18695348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22098313 - 22098285
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  22098313 atgagagagaaagttgtcacaaaagttgt 22098285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 26791258 - 26791286
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  26791258 atgagagagaaagttgtcacaaaagttgt 26791286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39628847 - 39628819
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  39628847 atgagagagaaagttgtcacaaaagttgt 39628819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30170033 - 30170067
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30170033 atgagagagaaagttgtcacaaaagttgtcataaa 30170067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5932777 - 5932813
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  5932777 atgagagagaaagttgtcacaaaagttgtcaaaaagt 5932813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 56557791 - 56557752
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagttgt 40  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  56557791 atgagagagaaaattgtcacaaaagttgtcataaaattgt 56557752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5249926 - 5249892
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  5249926 atgagagagaaagttgtcacaaatgttgtcataaa 5249892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 28458390 - 28458420
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  28458390 atgagagagaaagttgtcacaaaagttgtca 28458420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32012954 - 32012924
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  32012954 atgagagagaaagttgtcacaaaagttgtca 32012924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 37060375 - 37060345
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  37060375 atgagagagaaagttgtcacaaaagttgtca 37060345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38338935 - 38338969
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  38338935 atgagagagaaagttgtcacaaaagttgtcgtaaa 38338969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 50890087 - 50890117
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  50890087 atgagagagaaagttgtcacaaaagttgtca 50890117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 51255804 - 51255774
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  51255804 atgagagagaaagttgtcacaaaagttgtca 51255774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2268521 - 2268549
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  2268521 atgagagagaaagttgtcacaaaagttgt 2268549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3078921 - 3078949
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  3078921 atgagagagaaagttgtcacaaaagttgt 3078949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10250529 - 10250557
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  10250529 atgagagagaaagttgtcacaaaagttgt 10250557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18882988 - 18883016
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  18882988 atgagagagaaagttgtcacaaaagttgt 18883016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36130366 - 36130402
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    |||||||| |||||||||||||||||||||| |||||    
T  36130366 atgagagataaagttgtcacaaaagttgtcaaaaagt 36130402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37514145 - 37514173
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  37514145 atgagagagaaagttgtcacaaaagttgt 37514173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39478492 - 39478464
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  39478492 atgagagagaaagttgtcacaaaagttgt 39478464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42815462 - 42815434
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  42815462 atgagagagaaagttgtcacaaaagttgt 42815434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51577672 - 51577636
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  51577672 atgagagagaaagttgtcacaaaagttatcaaaaagt 51577636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 51734646 - 51734674
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  51734646 atgagagagaaagttgtcacaaaagttgt 51734674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 55609179 - 55609207
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  55609179 atgagagagaaagttgtcacaaaagttgt 55609207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10811193 - 10811159
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10811193 atgagagagaaagttgtcacaaaagttgtcataaa 10811159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49417633 - 49417599
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  49417633 atgagagagaaagttgtcacaaaagttgtcataaa 49417599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 55400057 - 55400023
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  55400057 atgagagagaaagttgtcacaaaagttgtcataaa 55400023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 49167808 - 49167777
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  49167808 atgagagagaaagttgtcacaaaagttgtcat 49167777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 21195904 - 21195934
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  21195904 atgagagagaaagttgtcacaaaagttgtca 21195934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34057966 - 34058000
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  34057966 atgagagagaaagttgtcacaaaagttatcataaa 34058000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 37927218 - 37927248
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  37927218 atgagagagaaagttgtcacaaaagttgtca 37927248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 46019520 - 46019491
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  46019520 atgagagagaaagttgtcacaaaagttgtc 46019491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5244286 - 5244258
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  5244286 atgagagagaaagttgtcacaaaagttgt 5244258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14207271 - 14207299
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  14207271 atgagagagaaagttgtcacaaaagttgt 14207299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14215019 - 14215047
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  14215019 atgagagagaaagttgtcacaaaagttgt 14215047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16479689 - 16479661
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  16479689 atgagagagaaagttgtcacaaaagttgt 16479661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19150332 - 19150360
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  19150332 atgagagagaaagttgtcacaaaagttgt 19150360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 23553790 - 23553818
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  23553790 atgagagagaaagttgtcacaaaagttgt 23553818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26014869 - 26014841
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  26014869 atgagagagaaagttgtcacaaaagttgt 26014841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27718799 - 27718827
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  27718799 atgagagagaaagttgtcacaaaagttgt 27718827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29573369 - 29573397
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  29573369 atgagagagaaagttgtcacaaaagttgt 29573397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29917037 - 29917065
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  29917037 atgagagagaaagttgtcacaaaagttgt 29917065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29966190 - 29966218
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  29966190 atgagagagaaagttgtcacaaaagttgt 29966218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34456848 - 34456812
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  34456848 atgagagagaaagttatcacaaaagttgtcaaaaagt 34456812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34592121 - 34592093
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  34592121 atgagagagaaagttgtcacaaaagttgt 34592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 37302603 - 37302575
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  37302603 atgagagagaaagttgtcacaaaagttgt 37302575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37894256 - 37894284
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  37894256 atgagagagaaagttgtcacaaaagttgt 37894284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41505548 - 41505520
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  41505548 atgagagagaaagttgtcacaaaagttgt 41505520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44413934 - 44413962
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  44413934 atgagagagaaagttgtcacaaaagttgt 44413962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44963832 - 44963860
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  44963832 atgagagagaaagttgtcacaaaagttgt 44963860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45293042 - 45293070
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  45293042 atgagagagaaagttgtcacaaaagttgt 45293070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 47472386 - 47472358
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  47472386 atgagagagaaagttgtcacaaaagttgt 47472358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 48353054 - 48353026
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  48353054 atgagagagaaagttgtcacaaaagttgt 48353026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 52326076 - 52326048
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  52326076 atgagagagaaagttgtcacaaaagttgt 52326048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2563762 - 2563728
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2563762 atgagagagaaagttgtcacaaaagttgtcataaa 2563728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6170688 - 6170654
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6170688 atgagagagaaagttgtcacaaaagttgtcataaa 6170654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6999081 - 6999115
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6999081 atgagagagaaagttgtcacaaaagttgtcataaa 6999115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13765458 - 13765424
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  13765458 atgagagagaaagttgtcacaaaagttgtcataaa 13765424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37316828 - 37316864
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  37316828 atgagagagaaagttgtcacaaaagttgtcaaaaagt 37316864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 14877015 - 14876985
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  14877015 atgagagagaaagttgtcacaaaagttgtca 14876985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44050073 - 44050039
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  44050073 atgagagagaaggttgtcacaaaagttgtcataaa 44050039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 8848710 - 8848739
Alignment:
Q  2 tgagagagaaagttgtcacaaaagttgtca 31  Q
    ||||||||||||||||||||||||||||||    
T  8848710 tgagagagaaagttgtcacaaaagttgtca 8848739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 27490745 - 27490774
Alignment:
Q  2 tgagagagaaagttgtcacaaaagttgtca 31  Q
    ||||||||||||||||||||||||||||||    
T  27490745 tgagagagaaagttgtcacaaaagttgtca 27490774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 28245786 - 28245757
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  28245786 atgagagagaaagttgtcacaaaagttgtc 28245757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6336310 - 6336282
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  6336310 atgagagagaaagttgtcacaaaagttgt 6336282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9207647 - 9207619
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  9207647 atgagagagaaagttgtcacaaaagttgt 9207619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11965851 - 11965815
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  11965851 atgagagagaaagctgtcacaaaagttgtcaaaaagt 11965815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18254223 - 18254251
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  18254223 atgagagagaaagttgtcacaaaagttgt 18254251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18737887 - 18737915
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  18737887 atgagagagaaagttgtcacaaaagttgt 18737915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19843542 - 19843514
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  19843542 atgagagagaaagttgtcacaaaagttgt 19843514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23690523 - 23690559
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  23690523 atgagagagaaagttgtcataaaagttgtcaaaaagt 23690559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37731213 - 37731249
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    |||||||||||| |||||||||||||||||| |||||    
T  37731213 atgagagagaaaattgtcacaaaagttgtcaaaaagt 37731249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10890059 - 10890093
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10890059 atgagagagaaagttgtcacaaaagttgtcataaa 10890093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11947853 - 11947819
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11947853 atgagagagaaagttgtcacaaaagttgtcataaa 11947819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13489720 - 13489686
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  13489720 atgagagagaaagttgtcacaaaagttgtcataaa 13489686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15705075 - 15705109
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15705075 atgagagagaaagttgtcacaaaagttgtcataaa 15705109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32915085 - 32915119
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32915085 atgagagagaaagttgtcacaaaagttgtcataaa 32915119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47214266 - 47214232
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  47214266 atgagagagaaagttgtcacaaaagttgtcataaa 47214232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 51286380 - 51286414
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  51286380 atgagagagaaagttgtcacaaaagttgtcataaa 51286414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 52362540 - 52362506
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  52362540 atgagagagaaagttgtcacaaaagttgtcataaa 52362506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17082756 - 17082792
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  17082756 atgagagagaaagttgtcacaaaagttgtcaaaaagt 17082792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24806235 - 24806271
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  24806235 atgagagagaaagttgtcacaaaagttgtcaaaaagt 24806271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27742675 - 27742639
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  27742675 atgagagagaaagttgtcacaaaagttgtcaaaaagt 27742639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48858881 - 48858845
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  48858881 atgagagagaaagttgtcacaaaagttgtcaaaaagt 48858845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 9566974 - 9567004
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  9566974 atgagagagaaagttgtcacaaaagttgtca 9567004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 26967267 - 26967237
Alignment:
Q  2 tgagagagaaagttgtcacaaaagttgtcat 32  Q
    |||||||||||||||||||||||||||||||    
T  26967267 tgagagagaaagttgtcacaaaagttgtcat 26967237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34008238 - 34008204
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  34008238 atgagatagaaagttgtcacaaaagttgtcataaa 34008204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 48983681 - 48983711
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  48983681 atgagagagaaagttgtcacaaaagttgtca 48983711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 18434851 - 18434822
Alignment:
Q  2 tgagagagaaagttgtcacaaaagttgtca 31  Q
    ||||||||||||||||||||||||||||||    
T  18434851 tgagagagaaagttgtcacaaaagttgtca 18434822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 649826 - 649798
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  649826 atgagagagaaagttgtcacaaaagttgt 649798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3982045 - 3982073
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  3982045 atgagagagaaagttgtcacaaaagttgt 3982073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8350210 - 8350238
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  8350210 atgagagagaaagttgtcacaaaagttgt 8350238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27465071 - 27465099
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  27465071 atgagagagaaagttgtcacaaaagttgt 27465099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 37685388 - 37685360
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  37685388 atgagagagaaagttgtcacaaaagttgt 37685360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37700130 - 37700158
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  37700130 atgagagagaaagttgtcacaaaagttgt 37700158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45333627 - 45333599
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  45333627 atgagagagaaagttgtcacaaaagttgt 45333599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 49559212 - 49559240
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  49559212 atgagagagaaagttgtcacaaaagttgt 49559240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 49570054 - 49570026
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  49570054 atgagagagaaagttgtcacaaaagttgt 49570026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 49931611 - 49931583
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  49931611 atgagagagaaagttgtcacaaaagttgt 49931583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10994 - 10958
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  10994 atgagagagaaagttgtcacaaaagttgtcaaaaagt 10958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1068664 - 1068628
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1068664 atgagagagaaagttgtcacaaaagttgtcaaaaagt 1068628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3946298 - 3946268
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  3946298 atgagagagaaagttgtcacaaaagttgtca 3946268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4658276 - 4658310
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  4658276 atgagagaaaaagttgtcacaaaagttgtcataaa 4658310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12707207 - 12707173
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  12707207 atgagagagaaagttgtcgcaaaagttgtcataaa 12707173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12735025 - 12735059
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  12735025 atgagagagaaaattgtcacaaaagttgtcataaa 12735059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33100482 - 33100516
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  33100482 atgagagagaaagttgtcacaaaagttgttataaa 33100516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33451576 - 33451606
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  33451576 atgagagagaaagttgtcacaaaagttgtca 33451606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 41600367 - 41600337
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  41600367 atgagagagaaagttgtcacaaaagttgtca 41600337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 41159902 - 41159931
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  41159902 atgagagagaaagttgtcacaaaagttgtc 41159931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 67174 - 67202
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  67174 atgagagagaaagttgtcacaaaagttgt 67202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2730974 - 2731010
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  2730974 atgagagagaaagttgttacaaaagttgtcaaaaagt 2731010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6440139 - 6440111
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  6440139 atgagagagaaagttgtcacaaaagttgt 6440111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10644815 - 10644843
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  10644815 atgagagagaaagttgtcacaaaagttgt 10644843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 13970977 - 13970949
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  13970977 atgagagagaaagttgtcacaaaagttgt 13970949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25830259 - 25830287
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  25830259 atgagagagaaagttgtcacaaaagttgt 25830287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 27325815 - 27325787
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  27325815 atgagagagaaagttgtcacaaaagttgt 27325787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34435750 - 34435786
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    |||||||||||| |||||||||||||||||| |||||    
T  34435750 atgagagagaaaattgtcacaaaagttgtcaaaaagt 34435786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35067218 - 35067190
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  35067218 atgagagagaaagttgtcacaaaagttgt 35067190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2008871 - 2008907
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  2008871 atgagagagaaagttgtcacaaaagttgtcaaaaagt 2008907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 12007199 - 12007229
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  12007199 atgagagagaaagttgtcacaaaagttgtca 12007229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 13152650 - 13152620
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  13152650 atgagagagaaagttgtcacaaaagttgtca 13152620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35586786 - 35586820
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  35586786 atgagagagaaagttgtcacaaaagttatcataaa 35586820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41893973 - 41893939
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  41893973 atgaaagagaaagttgtcacaaaagttgtcataaa 41893939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 47448884 - 47448854
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  47448884 atgagagagaaagttgtcacaaaagttgtca 47448854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 15325652 - 15325681
Alignment:
Q  2 tgagagagaaagttgtcacaaaagttgtca 31  Q
    ||||||||||||||||||||||||||||||    
T  15325652 tgagagagaaagttgtcacaaaagttgtca 15325681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 44184572 - 44184601
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  44184572 atgagagagaaagttgtcacaaaagttgtc 44184601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1471304 - 1471332
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  1471304 atgagagagaaagttgtcacaaaagttgt 1471332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21204387 - 21204359
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  21204387 atgagagagaaagttgtcacaaaagttgt 21204359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30941443 - 30941415
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  30941443 atgagagagaaagttgtcacaaaagttgt 30941415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33845100 - 33845064
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    |||| |||||||||||||||||||||||||| |||||    
T  33845100 atgaaagagaaagttgtcacaaaagttgtcaaaaagt 33845064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34978354 - 34978318
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  34978354 atgagagagaaagttgtcacaaaaattgtcaaaaagt 34978318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42584860 - 42584832
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  42584860 atgagagagaaagttgtcacaaaagttgt 42584832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38483 - 38449
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaa 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  38483 atgagaaagaaagttgtcacaaaagttgtcataaa 38449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 101919 - 101949
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtca 31  Q
    |||||||||||||||||||||||||||||||    
T  101919 atgagagagaaagttgtcacaaaagttgtca 101949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11022 - 10993
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  11022 atgagagagaaagttgtcacaaaagttgtc 10993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28340 - 28376
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgtcataaagt 37  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  28340 atgagagagaaagttgtcacaaaagttatcaaaaagt 28376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 366351 - 366323
Alignment:
Q  1 atgagagagaaagttgtcacaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  366351 atgagagagaaagttgtcacaaaagttgt 366323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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