View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13154_low_2 (Length: 481)
Name: NF13154_low_2
Description: NF13154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13154_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 15393861 - 15394327
Alignment:
| Q |
1 |
ttgccggcttcaatccaaacttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagtttttgttctgtttccaatgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15393861 |
ttgccggcttcaatccaaacttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagtttttgttctgtttccaatgttt |
15393960 |
T |
|
| Q |
101 |
tctgtannnnnnnn-----gtgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaagttattgaatacagttcgaaat |
195 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15393961 |
tctgtatttttttttttttgtgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaagttattgaatacagttcgaaat |
15394060 |
T |
|
| Q |
196 |
ggcttcaccgttagagattgatgaagagaatgataacaaaggtagtatgtgggatttgcaacagaaattcgaccagccaatggatgcagaagcaggaagg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15394061 |
ggcttcaccgttagagattgatgaagagaatgataacaaaggtagtatgtgggatttgcaacagaaatttgaccagccaatggatgcagaagcaggaagg |
15394160 |
T |
|
| Q |
296 |
ctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactgcaatttgcaacgttgaaattttgatgtctacaaca |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15394161 |
ctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactgcaatttgcaactttgaaattttgatgtctacaaca |
15394260 |
T |
|
| Q |
396 |
tgtcttttaagtgattttaagtaatttttcgatctatgttattttgatttgtttcagaagttttctg |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15394261 |
tgtcttttaagtgattttaagtaatttttcgatctatgttaatttgatttgtttcagaagttttctg |
15394327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 156 - 462
Target Start/End: Original strand, 15385586 - 15385893
Alignment:
| Q |
156 |
agaaattagtagttggaagttattgaatacagttcgaaatggcttcaccgttagagattgatgaagagaatgataacaaaggtagtatgtgggatttgca |
255 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
15385586 |
agaacttaggagttggaagttattgaatcaagttctaaatggcttcgccgttagagattgacgaagagaatgataacaaaggcagtatgtgggatttgga |
15385685 |
T |
|
| Q |
256 |
acagaaattcgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacatagga |
355 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15385686 |
acagaaacttgaccagccaatggatgcagaagcaggaaggctcagaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacatagga |
15385785 |
T |
|
| Q |
356 |
tactgcaatttgcaacgttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaa-tttttcgatctatgttattttgatttgtttcagaa |
454 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15385786 |
aactgcaatttgcaactttgaaattttgatgtctacgacatgtctgttaagtgattttaagtaattttttcgatctatgttattttgatttgtttcagaa |
15385885 |
T |
|
| Q |
455 |
gttttctg |
462 |
Q |
| |
|
|||||||| |
|
|
| T |
15385886 |
gttttctg |
15385893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 326
Target Start/End: Complemental strand, 38669790 - 38669678
Alignment:
| Q |
214 |
tgatgaagagaatgataacaaaggtagtatgtgggatttgcaacagaaattcgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacaga |
313 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| | ||||| | |||||||| ||||| | ||| |||||||| |||| |||||||||||| |
|
|
| T |
38669790 |
tgatgaagagggtgataacaaaggtagtatgtgggatttggatcagaagcttgaccagcctatggaggaagaggcaggaagactcaggaatatgtacaga |
38669691 |
T |
|
| Q |
314 |
gaaaaagtatgat |
326 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38669690 |
gaaaaagtatgat |
38669678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University