View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13154_low_3 (Length: 366)
Name: NF13154_low_3
Description: NF13154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13154_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 352
Target Start/End: Original strand, 50336582 - 50336913
Alignment:
| Q |
21 |
gttcttgtagatctgcaagagaataactccttgacttgaagcttctaagtctaagtctcatttcagcagcataggattcatgcattctaccatgaccaat |
120 |
Q |
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| T |
50336582 |
gttcttgtagatctgcaagagaataactccttgacttgaagcttctaagtctaagtctcatttcagcagcataggattcatgcattctaccatgaccaat |
50336681 |
T |
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| Q |
121 |
ctgaaactggtcttcttgtttcttatcctcagccaaggaattagaggaagatgaagatgatgaaccagatggcatttttctagccttttcctcatcttca |
220 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50336682 |
ctgaacctggtcttcttgtttcttatcatcagccaaggaattagaggaagatgaagatgatgaaccagatggcatttttctagccttttcctcatcttca |
50336781 |
T |
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| Q |
221 |
taatcataataaacatcatcataatcatcacgatcctcatttaacggcaaaagtggcatggattgaggatttgaccaagaatagaaagatgattttcttg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50336782 |
taatcataataaacatcatcataatcatcacgatcctcatttacaggcaaaagtggcatggattgaggatttgaccaagaatagaaagatgattttcttg |
50336881 |
T |
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| Q |
321 |
aaaatttggatgcaattagaacccttcttctt |
352 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
50336882 |
aaaatttggatgcaattagaacccttcttctt |
50336913 |
T |
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