View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13155_low_4 (Length: 505)

Name: NF13155_low_4
Description: NF13155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13155_low_4
NF13155_low_4
[»] chr7 (9 HSPs)
chr7 (18-494)||(33410339-33410803)
chr7 (153-494)||(33424241-33424582)
chr7 (222-494)||(33416188-33416460)
chr7 (171-497)||(33428024-33428351)
chr7 (261-494)||(33436393-33436626)
chr7 (18-105)||(33416563-33416647)
chr7 (18-105)||(33424633-33424718)
chr7 (18-72)||(33427877-33427931)
chr7 (111-149)||(33416504-33416542)
[»] scaffold0262 (1 HSPs)
scaffold0262 (290-494)||(5180-5384)
[»] chr1 (4 HSPs)
chr1 (251-455)||(24985049-24985253)
chr1 (251-455)||(24990879-24991083)
chr1 (18-59)||(24984803-24984844)
chr1 (18-59)||(24990633-24990674)


Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 33410803 - 33410339
Alignment:
Q  18 cactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggcttcatatttaattgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  33410803 cactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggtttcatattcaattgtt 33410704  T
Q  118 taactaattagtgtatctcataattataattagggttataattaacttttgtttagatgaacttgtattaatctaatatgaactaattcagttttatctc 217  Q
    ||||||||||||||||||||||||||||||||            |||||||||||||||||| |||||||||||||||||||||||||  |||| |||||    
T  33410703 taactaattagtgtatctcataattataatta------------acttttgtttagatgaacatgtattaatctaatatgaactaattttgtttcatctc 33410616  T
Q  218 cttctttttagttttcaactatgacccttcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagca 317  Q
     ||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410615 tttctttttagttttcaactatgatccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagca 33410516  T
Q  318 ctttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttctgctcgtcaaatgaagttgg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33410515 ctttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttgg 33410416  T
Q  418 tcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410415 tcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct 33410339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 153 - 494
Target Start/End: Complemental strand, 33424582 - 33424241
Alignment:
Q  153 ttataattaacttttgtttagatgaacttgtattaatctaatatgaactaattcagttttatctccttctttttagttttcaactatgacccttcaaggc 252  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||| ||  ||||||    
T  33424582 ttataattaacttttgtttagatgaacatgtattaatctaatatgaactaattttgtttcatcttcttctttttagttttcaactatgatccggcaaggc 33424483  T
Q  253 acaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaac 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33424482 acaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaac 33424383  T
Q  353 agaaggaagaaagtggtatgtttgtggagttgctgatcactgttctgctcgtcaaatgaagttggtcatcactgttctagccgaaggtgcacctgctcct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33424382 agaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccgaaggtgcacctgctcct 33424283  T
Q  453 tctccaccaccttcttctgatgctcactctgttgtttcatct 494  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33424282 tctccaccaccttcttctgatgctcactctgttgtttcatct 33424241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 222 - 494
Target Start/End: Complemental strand, 33416460 - 33416188
Alignment:
Q  222 tttttagttttcaactatgacccttcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcacttt 321  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  33416460 tttttagttttcaactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcacttt 33416361  T
Q  322 ctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttctgctcgtcaaatgaagttggtcat 421  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33416360 ctaccggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcat 33416261  T
Q  422 cactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416260 cactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct 33416188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 171 - 497
Target Start/End: Original strand, 33428024 - 33428351
Alignment:
Q  171 tagatgaacttgtattaatctaatatgaactaattcagttttatctccttc-tttttagttttcaactatgacccttcaaggcacaatgttttcaaagta 269  Q
    |||||||||| |||||||||||||| |||||||||  ||||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||     
T  33428024 tagatgaactggtattaatctaatacgaactaattacgttttatcttctttatttttagttttcaactatgacccttcaagacacaatgttttcaaagtg 33428123  T
Q  270 aatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggt 369  Q
    || |||||| ||||||| || ||||||||||||||| |||| |||||||||||||| ||||||||||| ||||  ||||| || |||| || ||||||||    
T  33428124 aacggcacattctttcagagatgcacttttccaccacaaaacgaagcactttctaccggaaaggatattattcccctaaagactgaagaaacaaagtggt 33428223  T
Q  370 atgtttgtggagttgctgatcactgttctgctcgtcaaatgaagttggtcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttc 469  Q
    ||||||||||  | |||||| |||||||||||||||| ||||||||  |||||||||||||||| ||| |||| |||||||||||||  |||||||||||    
T  33428224 atgtttgtggcatagctgataactgttctgctcgtcacatgaagttcatcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttc 33428323  T
Q  470 tgatgctcactctgttgtttcatctgtg 497  Q
    ||||||||| ||||||||||||||||||    
T  33428324 tgatgctcattctgttgtttcatctgtg 33428351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 261 - 494
Target Start/End: Complemental strand, 33436626 - 33436393
Alignment:
Q  261 ttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaa 360  Q
    |||||||| ||||| ||||| ||| |   |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  33436626 ttcaaagtgaatggtacactttttaaggactgcacttttccaccaaaaaatgaagcactctctacgggaaaggatatcattcaactaaaaacagaaggaa 33436527  T
Q  361 gaaagtggtatgtttgtggagttgctgatcactgttctgctcgtcaaatgaagttggtcatcactgttctagccgaaggtgcacctgctccttctccacc 460  Q
    ||||||||||||||||||| || |||||||| |||||||||| ||||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||    
T  33436526 gaaagtggtatgtttgtggcgtagctgatcattgttctgctcatcaaatgaaatttgtcatcactgttctagcagaaggcgcacctgctccttcccctcc 33436427  T
Q  461 accttcttctgatgctcactctgttgtttcatct 494  Q
     || |||||| ||||||||||| |||| ||||||    
T  33436426 tccatcttctaatgctcactctattgtatcatct 33436393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 33416647 - 33416563
Alignment:
Q  18 cactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggcttca 105  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||| |||| ||||||||| ||||    
T  33416647 cactcaatgggctcaagacaaagtttttcgtgttggagacaacctaggtatg---taaaaggaaaaaataaatgtccatttggtttca 33416563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 33424718 - 33424633
Alignment:
Q  18 cactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggcttca 105  Q
    |||||| |||||||||||||||||||| ||||||||||||||  ||||||||||  ||| ||||||||||||| | ||||||| ||||    
T  33424718 cactcaatgggctcaagacaaagttttccgtgttggagacaacttaggtatgta--aaagggaaaaaacaaattttcatttggtttca 33424633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 33427877 - 33427931
Alignment:
Q  18 cactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaa 72  Q
    |||||| |||||  |||||||||||||||||||||| |||||||| |||||||||    
T  33427877 cactcaatgggcgtaagacaaagtttttcgtgttggtgacaatcttggtatgtaa 33427931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 33416542 - 33416504
Alignment:
Q  111 aattgtttaactaattagtgtatctcataattataatta 149  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  33416542 aattgcttaactaattagtgtatctcatagttataatta 33416504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 290 - 494
Target Start/End: Original strand, 5180 - 5384
Alignment:
Q  290 ctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||    
T  5180 ctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgat 5279  T
Q  390 cactgttctgctcgtcaaatgaagttggtcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgttt 489  Q
    || |||||||||| |||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||  | || || |||||| ||||||||||| |||| |    
T  5280 cattgttctgctcatcaaataaagtttgtcatcactgttctagcagaaggcgcatctgctccttccactcctccatcttctaatgctcactctattgtat 5379  T
Q  490 catct 494  Q
    |||||    
T  5380 catct 5384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 251 - 455
Target Start/End: Original strand, 24985049 - 24985253
Alignment:
Q  251 gcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaa 350  Q
    ||||||||| ||||||||  |||| | ||||||||||||||||||||||||| || |||||||||||||||| || ||||||||  | |||||||| |||    
T  24985049 gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa 24985148  T
Q  351 acagaaggaagaaagtggtatgtttgtggagttgctgatcactgttctgctcgtcaaatgaagttggtcatcactgttctagccgaaggtgcacctgctc 450  Q
    || |||||||||||||||||||| ||||||   ||  |||| ||  ||||||||||||||||| | ||||||| ||| ||||  |||||||||||| | |    
T  24985149 accgaaggaagaaagtggtatgtatgtggaaaggcaaatcattgcgctgctcgtcaaatgaagcttgtcatcaatgtactagaagaaggtgcaccttcgc 24985248  T
Q  451 cttct 455  Q
    |||||    
T  24985249 cttct 24985253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 251 - 455
Target Start/End: Original strand, 24990879 - 24991083
Alignment:
Q  251 gcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaa 350  Q
    ||||||||| ||||||||  |||| | ||||||||||||||||||||||||| || |||||||||||||||| || ||||||||  | |||||||| |||    
T  24990879 gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa 24990978  T
Q  351 acagaaggaagaaagtggtatgtttgtggagttgctgatcactgttctgctcgtcaaatgaagttggtcatcactgttctagccgaaggtgcacctgctc 450  Q
    || |||||||||||||||||||| ||||||   ||  |||| ||  ||||||||||||||||| | ||||||| ||| ||||  |||||||||||| | |    
T  24990979 accgaaggaagaaagtggtatgtatgtggaaaggcaaatcattgcgctgctcgtcaaatgaagcttgtcatcaatgtactagaagaaggtgcaccttcgc 24991078  T
Q  451 cttct 455  Q
    |||||    
T  24991079 cttct 24991083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 24984803 - 24984844
Alignment:
Q  18 cactcagtgggctcaagacaaagtttttcgtgttggagacaa 59  Q
    |||||| ||||| ||||||||||||||||||||||| |||||    
T  24984803 cactcaatgggcccaagacaaagtttttcgtgttggtgacaa 24984844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 24990633 - 24990674
Alignment:
Q  18 cactcagtgggctcaagacaaagtttttcgtgttggagacaa 59  Q
    |||||| ||||| ||||||||||||||||||||||| |||||    
T  24990633 cactcaatgggcccaagacaaagtttttcgtgttggtgacaa 24990674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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