View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13155_low_6 (Length: 250)
Name: NF13155_low_6
Description: NF13155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13155_low_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 14560921 - 14561163
Alignment:
| Q |
8 |
tgaaatgaaaatggacaatgacatcaacaatggaagaggtcccccaatattaaaaaggcaaggacaaacatgtcacatatttggaagtatgttgccttta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14560921 |
tgaaatgaaaatggacaatgacatcaacaatggaagaggtcccccaatattaaaaaggcaaggacaaacatgtcacatatttggaagtatgttgccttta |
14561020 |
T |
|
| Q |
108 |
cctggtgagagtccaaaatatgctcaactatacatatttgatacggagaatgaaatttcaaatagaatgaaaacctacaggtacaacatacacatgttta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14561021 |
cctggtgagagtccaaaatatgctcaactatacatatttgatacggagaatgaaatttcaaatagaatgaaaacctacaggtacaacatacacatgttta |
14561120 |
T |
|
| Q |
208 |
ttactaatttttaaaaatttcattggagaataaaatttcatat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14561121 |
ttactaatttttaaaaatttcattggagaataaaatttcatat |
14561163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 153444 - 153278
Alignment:
| Q |
12 |
atgaaaatggacaatgacatcaacaatggaagaggtcccccaatattaaaaaggcaaggacaaacatgtcacatatttggaagtatgttgcctttacctg |
111 |
Q |
| |
|
||||||||||| | | | || |||||||||| |||||| |||| |||| || |||||||||||||||||||| | |||||||| |||||||||| || | |
|
|
| T |
153444 |
atgaaaatggatactaaaattaacaatggaaaaggtccaccaactttaagaatgcaaggacaaacatgtcacagagttggaagtctgttgcctttgccag |
153345 |
T |
|
| Q |
112 |
gtgagagtccaaaatatgctcaactatacatatttgatacggagaatgaaatttcaaatagaatgaa |
178 |
Q |
| |
|
| || ||||| ||||||||||| |||||||| || || || || |||||||| |||||| ||||||| |
|
|
| T |
153344 |
gggatagtcctaaatatgctcagctatacattttcgacactgataatgaaatatcaaatcgaatgaa |
153278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 18065773 - 18065607
Alignment:
| Q |
12 |
atgaaaatggacaatgacatcaacaatggaagaggtcccccaatattaaaaaggcaaggacaaacatgtcacatatttggaagtatgttgcctttacctg |
111 |
Q |
| |
|
||||||||||| | | | || |||||||||| |||||| |||| |||| || |||||||||||||||||||| | |||||||| |||||||||| || | |
|
|
| T |
18065773 |
atgaaaatggatactaaaattaacaatggaaaaggtccaccaactttaagaatgcaaggacaaacatgtcacagagttggaagtctgttgcctttgccag |
18065674 |
T |
|
| Q |
112 |
gtgagagtccaaaatatgctcaactatacatatttgatacggagaatgaaatttcaaatagaatgaa |
178 |
Q |
| |
|
| || ||||| ||||||||||| |||||||| || || || || |||||||| |||||| ||||||| |
|
|
| T |
18065673 |
gggatagtcctaaatatgctcagctatacattttcgacactgataatgaaatatcaaatcgaatgaa |
18065607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 126708 - 126597
Alignment:
| Q |
66 |
caaggacaaacatgtcacatatttggaagtatgttgcctttacctggtgagagtccaaaatatgctcaactatacatatttgatacggagaatgaaattt |
165 |
Q |
| |
|
||||| ||||| |||||| | ||||||| ||||| || ||||| ||| | || ||||||||||||||||||||||| ||||| | || ||||| |||| |
|
|
| T |
126708 |
caagggcaaacctgtcactgaattggaagcatgttaccattaccaggtcaaagaccaaaatatgctcaactatacatttttgacatagaaaatgagattt |
126609 |
T |
|
| Q |
166 |
caaatagaatga |
177 |
Q |
| |
|
| |||||||||| |
|
|
| T |
126608 |
ctaatagaatga |
126597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University