View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13155_low_8 (Length: 206)
Name: NF13155_low_8
Description: NF13155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13155_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 14561382 - 14561558
Alignment:
| Q |
16 |
aatatctgaagttgctgcacttcctaggtgatatagactctgcttcccacagagatatcatcatgcaaggacaaactagaaatttgcaaagaatagatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14561382 |
aatatctgaagttgctgcacttcctaggtgatatagactctgcttcccacagagatatcatcatgcaaggacaaactagaaatttgcaaagaatagatga |
14561481 |
T |
|
| Q |
116 |
atttcattccagttatttgagtttccaatatcctcttatatttccatatggagaagatggataccgtccttccattt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14561482 |
atttcattccagttatttgagtttccaatatcctcttatatttccatatggagaagatggataccgtccttccattt |
14561558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 18065291 - 18065155
Alignment:
| Q |
42 |
ggtgatatagactctgcttcccacagagatatcatcatgcaaggacaaactagaaatttgcaaagaatagatgaatttcattccagttatttgagtttcc |
141 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| || ||||||||||| || ||||| ||||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
18065291 |
ggtgatattgactctgcttcacatagagatataattatgcaaggacagtctggaaatctgcaaagaatagatgaatttcatgcaagttacttgagtttcc |
18065192 |
T |
|
| Q |
142 |
aatatcctcttatatttccatatggagaagatggata |
178 |
Q |
| |
|
|||||||||| || ||||||||||| || |||||||| |
|
|
| T |
18065191 |
aatatcctctcatttttccatatggtgaggatggata |
18065155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 152962 - 152826
Alignment:
| Q |
42 |
ggtgatatagactctgcttcccacagagatatcatcatgcaaggacaaactagaaatttgcaaagaatagatgaatttcattccagttatttgagtttcc |
141 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| || ||||||||||| || ||||| ||||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
152962 |
ggtgatattgactctgcttcatatagagatataattatgcaaggacagtctggaaatctgcaaagaatagatgaatttcatgcaagttacttgagtttcc |
152863 |
T |
|
| Q |
142 |
aatatcctcttatatttccatatggagaagatggata |
178 |
Q |
| |
|
|||||||||| || ||||||||||| || |||||||| |
|
|
| T |
152862 |
aatatcctctcatttttccatatggtgaggatggata |
152826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 22073698 - 22073580
Alignment:
| Q |
67 |
gagatatcatcatgcaaggacaaactagaaatttgcaaagaatagatgaatttcattccagttatttgagtttccaatatcctcttatatttccatatgg |
166 |
Q |
| |
|
||||||| ||| | |||||||||||| ||||| | ||| |||||||||| |||||| | |||||| | | | |||||||| ||||||||||||||||| |
|
|
| T |
22073698 |
gagatattatcctccaaggacaaactggaaatcttcaacgaatagatgagtttcatgcaagttatcttggctatcaatatccacttatatttccatatgg |
22073599 |
T |
|
| Q |
167 |
agaagatggataccgtcct |
185 |
Q |
| |
|
|||||| || ||||||||| |
|
|
| T |
22073598 |
agaagacggttaccgtcct |
22073580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University