View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13156_high_1 (Length: 771)

Name: NF13156_high_1
Description: NF13156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13156_high_1
NF13156_high_1
[»] chr1 (28 HSPs)
chr1 (21-527)||(25493662-25494154)
chr1 (608-771)||(25493334-25493497)
chr1 (54-144)||(24047064-24047154)
chr1 (34-144)||(31794226-31794336)
chr1 (41-144)||(17410242-17410345)
chr1 (34-144)||(50901585-50901695)
chr1 (50-144)||(12587290-12587383)
chr1 (54-144)||(27476733-27476823)
chr1 (34-144)||(33700735-33700845)
chr1 (35-144)||(21547442-21547551)
chr1 (41-144)||(6122805-6122908)
chr1 (41-144)||(52116743-52116846)
chr1 (28-122)||(8177166-8177260)
chr1 (34-128)||(17745234-17745328)
chr1 (72-144)||(1094567-1094639)
chr1 (34-110)||(19528323-19528399)
chr1 (77-144)||(3799953-3800020)
chr1 (41-128)||(6650606-6650693)
chr1 (49-144)||(10526842-10526937)
chr1 (29-144)||(40257398-40257513)
chr1 (41-144)||(52336736-52336839)
chr1 (157-187)||(11768923-11768953)
chr1 (30-144)||(14787298-14787412)
chr1 (54-144)||(36124857-36124947)
chr1 (54-144)||(44961789-44961879)
chr1 (56-133)||(8077666-8077742)
chr1 (107-144)||(10334052-10334089)
chr1 (56-137)||(31605817-31605898)
[»] chr8 (23 HSPs)
chr8 (29-144)||(16852339-16852454)
chr8 (34-144)||(23874345-23874454)
chr8 (29-141)||(19703452-19703564)
chr8 (34-144)||(968366-968476)
chr8 (48-144)||(6536538-6536634)
chr8 (41-137)||(43594287-43594383)
chr8 (34-137)||(23361618-23361721)
chr8 (41-135)||(35690035-35690129)
chr8 (28-144)||(44780076-44780192)
chr8 (34-137)||(2203496-2203599)
chr8 (41-144)||(11819787-11819890)
chr8 (34-144)||(18540302-18540412)
chr8 (34-144)||(26688869-26688979)
chr8 (54-143)||(3305151-3305240)
chr8 (28-144)||(28783058-28783174)
chr8 (158-197)||(12957551-12957590)
chr8 (54-137)||(29858018-29858101)
chr8 (54-144)||(10287499-10287589)
chr8 (54-144)||(11492035-11492125)
chr8 (50-144)||(31087220-31087314)
chr8 (29-102)||(5801046-5801119)
chr8 (41-86)||(6569791-6569836)
chr8 (159-192)||(13581847-13581880)
[»] chr7 (27 HSPs)
chr7 (35-144)||(41519227-41519335)
chr7 (56-144)||(37473640-37473728)
chr7 (29-137)||(42711957-42712065)
chr7 (54-144)||(48771962-48772052)
chr7 (53-137)||(26703148-26703232)
chr7 (41-144)||(43590918-43591021)
chr7 (34-144)||(24513801-24513911)
chr7 (54-144)||(2446332-2446422)
chr7 (46-112)||(7499918-7499984)
chr7 (34-144)||(25590615-25590725)
chr7 (54-144)||(37085511-37085601)
chr7 (157-197)||(14074477-14074517)
chr7 (157-197)||(14384505-14384545)
chr7 (34-102)||(22927480-22927548)
chr7 (34-122)||(26459394-26459482)
chr7 (88-144)||(41975945-41976001)
chr7 (34-137)||(15137557-15137660)
chr7 (29-144)||(17040974-17041089)
chr7 (156-191)||(30406785-30406820)
chr7 (29-144)||(30579334-30579449)
chr7 (632-680)||(37381856-37381906)
chr7 (54-144)||(15905636-15905725)
chr7 (54-144)||(20335793-20335883)
chr7 (54-144)||(45228987-45229077)
chr7 (156-197)||(3401067-3401108)
chr7 (56-137)||(5934147-5934228)
chr7 (71-144)||(7309397-7309469)
[»] chr5 (14 HSPs)
chr5 (46-144)||(29075797-29075895)
chr5 (34-144)||(16773811-16773921)
chr5 (49-144)||(28285271-28285366)
chr5 (34-144)||(17028226-17028336)
chr5 (34-144)||(21589292-21589402)
chr5 (29-133)||(30883171-30883275)
chr5 (57-144)||(84851-84938)
chr5 (29-144)||(16436617-16436730)
chr5 (69-144)||(29173529-29173604)
chr5 (98-144)||(4793042-4793088)
chr5 (34-144)||(12877697-12877807)
chr5 (48-137)||(22020831-22020920)
chr5 (51-144)||(30000137-30000230)
chr5 (56-133)||(33709603-33709679)
[»] chr3 (23 HSPs)
chr3 (30-144)||(2667862-2667976)
chr3 (54-144)||(14339634-14339724)
chr3 (34-144)||(47454579-47454689)
chr3 (34-137)||(30510168-30510271)
chr3 (29-144)||(36720380-36720495)
chr3 (40-141)||(32651403-32651504)
chr3 (63-144)||(52769945-52770026)
chr3 (29-144)||(8051213-8051328)
chr3 (29-144)||(10499071-10499186)
chr3 (57-144)||(44743817-44743904)
chr3 (41-144)||(51903840-51903943)
chr3 (34-144)||(4222145-4222255)
chr3 (56-142)||(19716223-19716309)
chr3 (34-92)||(31788984-31789042)
chr3 (55-144)||(10445101-10445190)
chr3 (29-137)||(31520574-31520682)
chr3 (41-144)||(8075089-8075192)
chr3 (54-137)||(28531027-28531110)
chr3 (54-144)||(4844473-4844563)
chr3 (54-144)||(4870169-4870259)
chr3 (59-133)||(39041954-39042027)
chr3 (34-131)||(14186652-14186748)
chr3 (56-133)||(25289816-25289892)
[»] chr2 (19 HSPs)
chr2 (34-144)||(1435068-1435177)
chr2 (34-144)||(33962746-33962856)
chr2 (41-137)||(23052492-23052588)
chr2 (27-137)||(39714989-39715099)
chr2 (29-137)||(3001378-3001486)
chr2 (61-144)||(25637182-25637265)
chr2 (29-144)||(37480074-37480189)
chr2 (34-137)||(42327364-42327467)
chr2 (34-144)||(12086091-12086201)
chr2 (56-144)||(12517716-12517803)
chr2 (157-188)||(21503420-21503451)
chr2 (56-143)||(30359680-30359766)
chr2 (29-144)||(42602553-42602668)
chr2 (35-102)||(42860353-42860420)
chr2 (54-108)||(3677351-3677405)
chr2 (54-144)||(19016055-19016145)
chr2 (54-132)||(21213793-21213871)
chr2 (34-95)||(11062364-11062425)
chr2 (48-141)||(11251105-11251198)
[»] chr6 (18 HSPs)
chr6 (47-144)||(3715469-3715566)
chr6 (41-144)||(21418481-21418584)
chr6 (34-144)||(6758384-6758494)
chr6 (54-144)||(24641152-24641242)
chr6 (29-122)||(12188287-12188380)
chr6 (29-144)||(24507498-24507613)
chr6 (29-144)||(33549103-33549218)
chr6 (80-144)||(18263890-18263954)
chr6 (158-197)||(8037039-8037078)
chr6 (77-144)||(13441104-13441171)
chr6 (54-144)||(346555-346644)
chr6 (34-144)||(1056647-1056757)
chr6 (29-95)||(10338185-10338251)
chr6 (46-144)||(20213057-20213155)
chr6 (46-144)||(22107080-22107178)
chr6 (31-100)||(6776613-6776682)
chr6 (56-133)||(11448890-11448966)
chr6 (51-144)||(16405106-16405198)
[»] chr4 (31 HSPs)
chr4 (28-144)||(7949416-7949532)
chr4 (57-137)||(39509097-39509177)
chr4 (47-144)||(30938181-30938278)
chr4 (41-137)||(4185104-4185200)
chr4 (34-137)||(19238546-19238649)
chr4 (46-144)||(8030166-8030264)
chr4 (34-144)||(31826613-31826723)
chr4 (28-144)||(51250484-51250600)
chr4 (97-144)||(3606984-3607031)
chr4 (34-137)||(55427169-55427272)
chr4 (54-144)||(21660106-21660196)
chr4 (54-144)||(21668870-21668960)
chr4 (34-144)||(28635700-28635810)
chr4 (54-144)||(47044741-47044830)
chr4 (54-144)||(51948504-51948594)
chr4 (47-144)||(12793873-12793970)
chr4 (34-137)||(37443706-37443806)
chr4 (85-137)||(22096577-22096629)
chr4 (48-144)||(23377974-23378070)
chr4 (34-122)||(37109335-37109423)
chr4 (29-144)||(37720176-37720291)
chr4 (56-144)||(47386753-47386841)
chr4 (47-137)||(13015444-13015534)
chr4 (30-144)||(13901742-13901856)
chr4 (163-197)||(30797700-30797734)
chr4 (54-144)||(40283948-40284038)
chr4 (159-196)||(19602969-19603006)
chr4 (55-144)||(37274421-37274510)
chr4 (46-95)||(38869784-38869833)
chr4 (56-133)||(40058954-40059030)
chr4 (88-137)||(49262653-49262702)
[»] scaffold0172 (1 HSPs)
scaffold0172 (29-144)||(15739-15854)
[»] scaffold0258 (1 HSPs)
scaffold0258 (54-144)||(15285-15375)
[»] scaffold0337 (1 HSPs)
scaffold0337 (29-144)||(1752-1867)
[»] scaffold0118 (1 HSPs)
scaffold0118 (34-137)||(41602-41705)
[»] scaffold0074 (1 HSPs)
scaffold0074 (54-144)||(45721-45811)
[»] scaffold0417 (1 HSPs)
scaffold0417 (29-137)||(10218-10326)
[»] scaffold0299 (1 HSPs)
scaffold0299 (54-108)||(11552-11606)
[»] scaffold0115 (1 HSPs)
scaffold0115 (82-144)||(42626-42688)
[»] scaffold0065 (1 HSPs)
scaffold0065 (29-94)||(12188-12253)
[»] scaffold0009 (1 HSPs)
scaffold0009 (54-107)||(19846-19899)


Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 21 - 527
Target Start/End: Complemental strand, 25494154 - 25493662
Alignment:
Q  21 tggagacgaaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaat 120  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494154 tggagacgaaacccacttgaattgacctagtggtattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaat 25494055  T
Q  121 ttaggtgggctaatttaacttcttnnnnnnnnnnnt--catgtggagacgataaacttactactttattacttggtacgttgaatttcgtccataaatgg 218  Q
    |||| |||||||||||||||||||              ||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  25494054 ttagatgggctaatttaacttcttaaaaaaaaaaaatccatgtggcgacgataaacttactactttattacttgttgcgttgaatttcgtccataaatgg 25493955  T
Q  219 atcatgatggataaaaatacgagggatggaaaggagataaaagagattccggtaataaggatataaggggagaagacccacggggatgaagacttttgaa 318  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||    
T  25493954 atcacgatggataaaaatacgagggatggaaaggagataaaagagattccggtaataaggatataagggga---------------tgaagacttttgaa 25493870  T
Q  319 gcatgacaaaacacaatatggagggaaaaggctatacaatgcacaaaagatcgaatactaactgtttctctacaaatcaaatcaaagtgatgagaataat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25493869 gcatgacaaaacacaatatggagggaaaaggctatacaatgcacaaaagatcgaatactaactgtttctctacaaatcaaatcaaagtgatgagaataat 25493770  T
Q  419 ataatagaaaatgaaaagagacgcaatgaattaaaatgtactcctattgtacatgaaagaagatttaaaagnnnnnnnatgcgcaatgaattacaattta 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  25493769 ataatagaaaatgaaaagagacgcaatgaattaaaatgtactcctattgtacatgaaagaagatttaaaag-ttttttatgcgcaatgaattacaattta 25493671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 608 - 771
Target Start/End: Complemental strand, 25493497 - 25493334
Alignment:
Q  608 tatatataatgcatttaaggatggtatagtcaatttgatattatatatgaaactctataaaaactcgtgcatcatacaagttggagtctagttataataa 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25493497 tatatataatgcatttaaggatggtatagtcaatttgatattatatatgacactctatagaaactcgtgcatcatacaagttggagtctagttataataa 25493398  T
Q  708 aatgcttttagtctataagctctaggtcaaccacccacggaccctcagtttcgatggttatttt 771  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25493397 aatgcttttagtctacaagctctaggtcaaccacccacggaccctcacttttgatggttatttt 25493334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 24047154 - 24047064
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||| ||  | ||||| |||| ||||||||||| || |||||| ||||||| |||| |||||||||| |||||||||||||||||    
T  24047154 tattggcttgagacttgggagtgtgctcctcctcgaggtttcaagttcgattctccccagtgccaatttaggttggctaatttaacttctt 24047064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 31794336 - 31794226
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| |||||||||||||  | ||||| |||| |||||| |||||| ||||||| ||| | || ||| |||||| ||||||||||    
T  31794336 cacttgggttggcctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtctagagttcgattccctctggtgtcaatttgggtgggctaa 31794237  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  31794236 tttagcttctt 31794226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 17410242 - 17410345
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    |||| ||||||| |||||| ||||||||| ||||| || | ||||||||| |||| |||||| |||||| |  || |||||||| | |||||||||||||    
T  17410242 gttggcctagtggtattggtttgggatctgggagtgtggtcctcctcgagatctcaagttcgattctcctttatgccaatttagataggctaatttaact 17410341  T
Q  141 tctt 144  Q
    ||||    
T  17410342 tctt 17410345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 50901585 - 50901695
Alignment:
Q  34 cacttgagttgacctagtgata-ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggcta 132  Q
    |||||| |||| ||||||| || ||||||||||| || | ||| |||| |||||||||||||| | |||| ||||| | |||| ||||||||||||||||    
T  50901585 cacttgggttggcctagtggtaattggcttgggacctggtagtgtgctcctcctcgaggtctcaaattcgattctctc-agtgccaatttaggtgggcta 50901683  T
Q  133 atttaacttctt 144  Q
    ||||| ||||||    
T  50901684 atttagcttctt 50901695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 12587290 - 12587383
Alignment:
Q  50 gtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||| ||||||||||  |||| |||| ||||||||||||||  ||||| ||||| |  ||| ||||||||||||||||||||| ||||||    
T  12587290 gtgatattgacttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgattctctccggtg-caatttaggtgggctaatttagcttctt 12587383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 27476823 - 27476733
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||  ||||||| |||| ||||||||| |||| |||| | ||||| || ||| | ||||||||||||||||||| ||||||    
T  27476823 tattggcttgggacttaggagtgtgctcctcctcgagatctcaagtttgattctctctggtgccgatttaggtgggctaatttagcttctt 27476733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 33700845 - 33700735
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| ||||||||||| |||| ||||| |||| |||||| |||||||  ||||| ||||| || ||| ||||||| | ||| ||     
T  33700845 cacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaagggggttag 33700746  T
Q  134 tttaacttctt 144  Q
    |||||||||||    
T  33700745 tttaacttctt 33700735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 21547551 - 21547442
Alignment:
Q  35 acttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaat 134  Q
    ||||| |||| ||||||| |||||||||||||  | ||||  |||| ||||||||||| ||  ||||| ||||| ||  || |||||||||||||||| |    
T  21547551 acttgggttggcctagtggtattggcttgggacatgggagggtgctcctcctcgaggtttcaggttcgattctctctgatgccaatttaggtgggctagt 21547452  T
Q  135 ttaacttctt 144  Q
    ||||||||||    
T  21547451 ttaacttctt 21547442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 6122805 - 6122908
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    |||| ||||||| ||| |||||||||  | ||||| |||| |||||| |||||||  ||||| ||| | |||||| |||||| |||||||||||||| ||    
T  6122805 gttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagct 6122904  T
Q  141 tctt 144  Q
    ||||    
T  6122905 tctt 6122908  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 52116846 - 52116743
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    |||| ||| ||| |||||||||||||  | ||||| |||| |||||| | |||||  ||||  |||||||||||| ||||| ||||||||||||||| ||    
T  52116846 gttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcaattctccctagtgccaattaaggtgggctaatttagct 52116747  T
Q  141 tctt 144  Q
    ||||    
T  52116746 tctt 52116743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 8177260 - 8177166
Alignment:
Q  28 gaaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaattt 122  Q
    ||||| || |||||||| ||||||| |||||||||||||||| ||||| |||| |||||| |||| ||  ||||| ||||| || ||| ||||||    
T  8177260 gaaacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctctggtgccaattt 8177166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 17745328 - 17745234
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||||| |||| ||||||| ||||||||||||| ||  | || |||| ||||||||||||||  ||||| ||||| || ||| ||||||||||||    
T  17745328 cacttgggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcgaggtctcatgttcgattctctctggtgtcaatttaggtgg 17745234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 1094567 - 1094639
Alignment:
Q  72 gagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||| |||| |||| ||||||||| | |||| ||||| |  ||| ||||||||||||||||||||||||||||    
T  1094567 gagtgtgctcctccacgaggtctcaaattcgattctctccggtgccaatttaggtgggctaatttaacttctt 1094639  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 19528399 - 19528323
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccc 110  Q
    |||||| |||| ||| ||| ||||||||||||||||| |||| |||| |||||| |||||||  ||||| |||||||    
T  19528399 cacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctccc 19528323  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 3799953 - 3800020
Alignment:
Q  77 tgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||| |||||||| || ||  ||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  3799953 tgctcctcctcgaagtttcaggttcgattctctctagtgccaatttaggtgggctaatttagcttctt 3800020  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 6650606 - 6650693
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| ||||||| |||||||||||||||  ||||| |||| |||||| | |||||  ||||| ||||| || ||| ||||||||||||    
T  6650606 gttggcctagtggtattggcttgggatcggggagtatgctcctcctcaatgtctcaggttcgattctctctggtgtcaatttaggtgg 6650693  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 10526842 - 10526937
Alignment:
Q  49 agtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||| ||||||||||||| || |||||||||| |||||| |||||||   |||| ||||| || | | |||||| |||||| ||||||| ||||||    
T  10526842 agtggtattggcttgggacctgggagtttgctcctcctcaaggtctcagattcgattctctctggagtcaatttgggtgggttaatttagcttctt 10526937  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 40257398 - 40257513
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||| ||| |||||||||| || || ||||| |||| |||||||||||||| |||||  ||||  |  ||| |||||| |||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgg 40257497  T
Q  129 gctaatttaacttctt 144  Q
    |||| |||| ||||||    
T  40257498 gctagtttagcttctt 40257513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 52336839 - 52336736
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    |||| ||||||| |||||||||||||||| ||||| |||| |||||  || ||||  ||||| || || || ||| |||||| | ||||||||||||| |    
T  52336839 gttggcctagtggtattggcttgggatctgggagtgtgctcctccttaagatctcaggttcgattatctctggtgtcaatttggatgggctaatttaatt 52336740  T
Q  141 tctt 144  Q
    ||||    
T  52336739 tctt 52336736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 11768953 - 11768923
Alignment:
Q  157 catgtggagacgataaacttactactttatt 187  Q
    |||||||||||||||||||||||||||||||    
T  11768953 catgtggagacgataaacttactactttatt 11768923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 14787412 - 14787298
Alignment:
Q  30 aactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtggg 129  Q
    ||||||||||||||||||||||| ||||| |||| || ||  |||| || |||||||| |||| ||  ||||| ||||| ||| |  ||||||| |||||    
T  14787412 aactcacttgagttgacctagtggtattgacttgagacctgagagtgtgtttctcctcaaggtgtcaggttcgattctctctaatatcaatttaagtggg 14787313  T
Q  130 ctaatttaacttctt 144  Q
     || |||| ||||||    
T  14787312 ttagtttagcttctt 14787298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 36124857 - 36124947
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| ||||||| ||  |||| |||| ||||| |||||||| |||| | | || ||||| | ||||||||||||||||||||| ||||||    
T  36124857 tattgacttgggacctgagagtgtgctcctccttgaggtctcaagtttgatccttcctagcgccaatttaggtgggctaatttagcttctt 36124947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 44961789 - 44961879
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||| ||||| ||| || |||| |||| ||||||  ||||||  ||||| ||||| |||||| |||||| |||||||||||||| ||||||    
T  44961789 tattagcttgagatttaagagtgtgctcctcctcagggtctcaggttcgattctctctagtgtcaatttgggtgggctaatttagcttctt 44961879  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 8077666 - 8077742
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||||||||||| |||||||||| ||||  ||||||||  ||||| ||||| || ||| |||||| ||||||||||    
T  8077666 ttggcttgggatcttggagtttgctcctcc-agaggtctcaggttcgattctctctggtgccaatttcggtgggctaa 8077742  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 10334089 - 10334052
Alignment:
Q  107 tccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||| || ||||||||||||||||||||||||||||    
T  10334089 tccctaatgtcaatttaggtgggctaatttaacttctt 10334052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 31605898 - 31605817
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    ||||||||||| || | ||| |||| |||||| ||||||| |||||| |||||||  ||| |||||| ||||||||| ||||    
T  31605898 ttggcttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctccccggtgccaatttgggtgggctagttta 31605817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 16852339 - 16852454
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||||||| ||||||||||||| || ||||| |||| ||||||||||||||  ||||| |||||| ||||| ||||||||||||    
T  16852339 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtgg 16852438  T
Q  129 gctaatttaacttctt 144  Q
    |||| |||| ||||||    
T  16852439 gctattttagcttctt 16852454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 23874454 - 23874345
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| ||||||||||||| || ||| | |||  ||||||||||||||  ||||| |||| |||||||||||||||||||||||||    
T  23874454 cacttgggttggcctagtggtattggcttgggacctgggaatctgcgcctcctcgaggtctcaggttcg-ttcttcctagtgacaatttaggtgggctaa 23874356  T
Q  134 tttaacttctt 144  Q
    |||||||||||    
T  23874355 tttaacttctt 23874345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 19703564 - 19703452
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||||||| ||||||||||||| ||  |||| |||| |||||| |||||||  ||||| |||||||||||| ||||| ||||||    
T  19703564 aaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccctagtgtcaattaaggtgg 19703465  T
Q  129 gctaatttaactt 141  Q
    |||||||||||||    
T  19703464 gctaatttaactt 19703452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 968366 - 968476
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    ||||||||||| ||| ||| ||||||||||||| || ||||| |||| ||||||||||||||  ||||| ||||| |   || |||||||||||||||||    
T  968366 cacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaa 968465  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  968466 tttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 6536538 - 6536634
Alignment:
Q  48 tagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| ||||||||||||| |||||||| |||| |||||| |||||||  ||||  ||||| || ||| ||||||||||||| ||||||| ||||||    
T  6536538 tagtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttctt 6536634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 43594383 - 43594287
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    |||| ||||||||||||||||| |||||||||| | || | |||||| |||||||  ||||| ||||| |||||| |||||| | ||||||||||||    
T  43594383 gttggcctagtgatattggcttaggatctaggaatgtgttcctcctcaaggtctcaggttcgattctctctagtgtcaatttggatgggctaattta 43594287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 23361721 - 23361618
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||||||| ||| ||||| |||||||| | ||||| |||| |||||| |||||||  ||||  ||||| || ||| |||||||||||||||||    
T  23361721 cacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaa 23361622  T
Q  134 ttta 137  Q
    ||||    
T  23361621 ttta 23361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 35690129 - 35690035
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatt 135  Q
    |||| ||||||| |||||||||||||||| || ||||||| |||||| |||||||  ||||| ||||| || ||| ||||||| || ||||||||    
T  35690129 gttggcctagtggtattggcttgggatctgggtgtttgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaagtaggctaatt 35690035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 44780192 - 44780076
Alignment:
Q  28 gaaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtg 127  Q
    ||||| |||||| |||| |||||||  ||||||||||||  | ||||| |||| |||||| |||||||  ||| | ||| | |||||| |||||| ||||    
T  44780192 gaaacccacttgggttggcctagtggcattggcttgggacttgggagtgtgctcctcctcaaggtctcaggtttgattccctctagtgtcaatttgggtg 44780093  T
Q  128 ggctaatttaacttctt 144  Q
    |||||||||| ||||||    
T  44780092 ggctaatttagcttctt 44780076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 2203496 - 2203599
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| ||||||||||||| || ||||| |||| |||||| |||||||  | ||  |||||||  ||| |||||| ||||||||||    
T  2203496 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggtcaattctccccggtgccaatttgggtgggctaa 2203595  T
Q  134 ttta 137  Q
    ||||    
T  2203596 ttta 2203599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 11819787 - 11819890
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    |||| ||||||| ||| |||||||||  | ||||| |||| |||||| |||||||  ||||| ||| | |||||| |||||| |||||||||||||| ||    
T  11819787 gttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaatttagct 11819886  T
Q  141 tctt 144  Q
    ||||    
T  11819887 tctt 11819890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 18540302 - 18540412
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| ||||||||||||| || ||||| | ||||||||| |||||||  ||||| ||||| || ||| ||||||  | ||| |||    
T  18540302 cacttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctctctggtgccaatttgagagggttaa 18540401  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  18540402 tttagcttctt 18540412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 26688869 - 26688979
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||| ||| | ||||||||||| || ||||| |||| |||||| |||||||  ||||  |||| ||||||| |||||| |||||||||     
T  26688869 cacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttcagttcttcctagtgtcaatttgggtgggctag 26688968  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  26688969 tttagcttctt 26688979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 3305240 - 3305151
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttct 143  Q
    |||||| ||||||||| ||||  |||| |||||| ||||||| | |||| || || || ||| ||||||||||||||||||||| |||||    
T  3305240 tattggtttgggatctgggagcgtgctcctcctcaaggtctcaaattcgattatctctggtgccaatttaggtgggctaatttatcttct 3305151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 28783058 - 28783174
Alignment:
Q  28 gaaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtg 127  Q
    ||||| |||||| |||| | | ||| |||||||||| || || ||||| |||| |||||| |||||||  ||||| ||||||   ||| |||||| ||||    
T  28783058 gaaacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtg 28783157  T
Q  128 ggctaatttaacttctt 144  Q
    |||||||||| ||||||    
T  28783158 ggctaatttagcttctt 28783174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 12957551 - 12957590
Alignment:
Q  158 atgtggagacgataaacttactactttattacttggtacg 197  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  12957551 atgtggagacgataagcttactactttattacttgttacg 12957590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 29858101 - 29858018
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    ||||||||||||| |  ||||| |||| ||||||||||||||  ||||| ||| ||   ||| |||||||||||||||||||||    
T  29858101 tattggcttgggaccagggagtgtgctcctcctcgaggtctcaggttcgattcccctcggtgccaatttaggtgggctaattta 29858018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 10287499 - 10287589
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||||  |||| | ||| |||||||||||||||||||  ||||  |||||| |  |  ||||||||||||||||||||| ||||||    
T  10287499 tattggcttgaaatctggaagtgtgcttctcctcgaggtctcaggttcaattctcctttatatcaatttaggtgggctaatttatcttctt 10287589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 11492125 - 11492035
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||| ||||| ||||| |||| || ||||||||||   ||||| |||||   |||| |||||| |||||||||||||| ||||||    
T  11492125 tattggcttgagatctgggagtgtgctccttctcgaggtcttaggttcgattctcttcagtgtcaatttgggtgggctaatttagcttctt 11492035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 31087314 - 31087220
Alignment:
Q  50 gtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||||||||| ||||| | |  ||||||||||||||  ||||| || || |  ||| |||||||  | |||||||||||||||||    
T  31087314 gtgatattggcttgggatctgggagtatccccctcctcgaggtctcaggttcgattatctccggtgtcaatttaaataggctaatttaacttctt 31087220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 5801046 - 5801119
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcg 102  Q
    |||| |||||| |||||||| ||| |||| ||||||||||||||||| |||| |  ||||| ||||| ||||||    
T  5801046 aaacccacttgggttgacctggtggtattagcttgggatctaggagtgtgctccgtctcgacgtctcaagttcg 5801119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 6569836 - 6569791
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcct 86  Q
    |||| |||||||||||||||||||||||| ||||| |||| |||||    
T  6569836 gttggcctagtgatattggcttgggatctgggagtgtgctcctcct 6569791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 13581880 - 13581847
Alignment:
Q  159 tgtggagacgataaacttactactttattacttg 192  Q
    |||||| |||||||||||||||||||||||||||    
T  13581880 tgtggaaacgataaacttactactttattacttg 13581847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 41519335 - 41519227
Alignment:
Q  35 acttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaat 134  Q
    ||||| |||| ||||||| ||||| |||||||| ||||||| |||| |||||| |||||||  ||||||||||| || ||| ||||||||||||||||||    
T  41519335 acttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctcaggttcgcttctctct-gtgtcaatttaggtgggctaat 41519237  T
Q  135 ttaacttctt 144  Q
    ||| ||||||    
T  41519236 ttagcttctt 41519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 37473640 - 37473728
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||| |||||||||||||||||||| ||||| ||||||||  ||||| ||||||||| || ||||||||||||| ||||||| ||||||    
T  37473640 ttggtttgggatctaggagtttgctcctccttgaggtctcaggttcgattctccctaatgtcaatttaggtgggttaatttagcttctt 37473728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 42711957 - 42712065
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    ||||||||||| |||| | ||||| |||| |||||| |  | ||||| |||| |||||| |||||||  ||||| |||||||||||| ||||||||||||    
T  42711957 aaactcacttgggttggcttagtggtattagcttggtacatgggagtgtgctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgg 42712056  T
Q  129 gctaattta 137  Q
    |||||||||    
T  42712057 gctaattta 42712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 48771962 - 48772052
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||||| ||||| |||| ||||| ||||||||  ||||| || |||| |||  ||||||||||||||||||||| ||||||    
T  48771962 tattggcttgggatctgggagtgtgctcctccttgaggtctcaggttcgattatcccaagtaccaatttaggtgggctaatttagcttctt 48772052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 26703148 - 26703232
Alignment:
Q  53 atattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    ||||||||||||||||| ||||| |||| || |||||||||||  ||||  || |||||| || |||||||||||||||||||||    
T  26703148 atattggcttgggatctgggagtgtgctccttctcgaggtctcaggttcatttatccctaatgccaatttaggtgggctaattta 26703232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 43590918 - 43591021
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    |||| ||| ||| |||||||||||||  | ||||| |||| |||||| | |||||  ||||| |||||||||||| ||||| ||||||||||||||| ||    
T  43590918 gttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagct 43591017  T
Q  141 tctt 144  Q
    ||||    
T  43591018 tctt 43591021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 24513801 - 24513911
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| |||||||||| ||| | ||||| | |||||||| ||||||||  ||||| || || ||  || |||||| ||||||||||    
T  24513801 cacttgggttggcctagtggtattggcttgagatttgggagtgtacttctccttgaggtctcaggttcgattttcactgatgtcaatttgggtgggctaa 24513900  T
Q  134 tttaacttctt 144  Q
    |||||||||||    
T  24513901 tttaacttctt 24513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 2446332 - 2446422
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||  | ||||| |||| ||||||||| |||| |||||| ||||| |  ||| | ||||||||||||||||||| ||||||    
T  2446332 tattggcttgggacttgggagtgtgctcctcctcgagatctcaagttcgattctctccggtgccgatttaggtgggctaatttagcttctt 2446422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 7499984 - 7499918
Alignment:
Q  46 cctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctcccta 112  Q
    ||||||||||||||||||||| ||  ||||||||| ||| ||||||||||  ||||| |||||||||    
T  7499984 cctagtgatattggcttgggacctgagagtttgctcctcttcgaggtctcaggttcgattctcccta 7499918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 25590615 - 25590725
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| ||||||||  || |||||||||| ||||| ||||| |||| ||||||||||||||| ||||| || ||    ||| ||||||  |||||||||    
T  25590615 cacttgggttgacctgttggtattggcttgagatctgggagtgtgctcctcctcgaggtctcgggttcgattttcttcggtgtcaatttgagtgggctaa 25590714  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  25590715 tttagcttctt 25590725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 37085601 - 37085511
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||| | ||||| ||||  |||||||||| ||  ||||| ||||||| | |  ||||||| ||||||||||||||||||||    
T  37085601 tattggcttgggatttgggagtgtgctcatcctcgaggtttcaggttcgattctccccaataccaatttaagtgggctaatttaacttctt 37085511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 14074477 - 14074517
Alignment:
Q  157 catgtggagacgataaacttactactttattacttggtacg 197  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  14074477 catgtgaagacgataaacttactactttattacttgttacg 14074517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 14384505 - 14384545
Alignment:
Q  157 catgtggagacgataaacttactactttattacttggtacg 197  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  14384505 catgtgaagacgataaacttactactttattacttgttacg 14384545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 22927480 - 22927548
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcg 102  Q
    |||||| |||| ||||||| ||||  |||||||||||||||| ||||||||||  ||||||| ||||||    
T  22927480 cacttgggttggcctagtggtattaacttgggatctaggagtgtgcttctcctaaaggtctccagttcg 22927548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 26459482 - 26459394
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaattt 122  Q
    |||||| |||| ||||||| ||||||||||||| || ||||| |||| |||||| |||||||  ||||| ||||| || ||| ||||||    
T  26459482 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaattt 26459394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 41975945 - 41976001
Alignment:
Q  88 gaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||| |||||| ||||| |||||| ||||||| ||||||||||||| ||||||    
T  41975945 gaggtctcaagttcgattctctctagtgtcaatttaagtgggctaatttagcttctt 41976001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 15137557 - 15137660
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||| ||| || || |||||||| ||||||| |||| |||||| |||||||  ||| | ||||| || ||| |||||| ||||||||||    
T  15137557 cacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaa 15137656  T
Q  134 ttta 137  Q
    ||||    
T  15137657 ttta 15137660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 17041089 - 17040974
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| ||||  ||||||  ||||||||||||||| | ||| |||| |||||| |||||||  ||||| ||||| | |||| |||||| |||||    
T  17041089 aaacccacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaaggtctcaggttcgattctctcaagtgccaatttgggtgg 17040990  T
Q  129 gctaatttaacttctt 144  Q
    |  |||||| ||||||    
T  17040989 gtcaatttagcttctt 17040974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 30406785 - 30406820
Alignment:
Q  156 tcatgtggagacgataaacttactactttattactt 191  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30406785 tcatgtggagacgattaacttactactttattactt 30406820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 30579334 - 30579449
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||| ||| |||||||||| || || ||||| | |  |||||| |||||||  ||||| || || || ||| ||||||||||||    
T  30579334 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggttcgattttctctggtgccaatttaggtgg 30579433  T
Q  129 gctaatttaacttctt 144  Q
    ||||||||| ||||||    
T  30579434 gctaatttagcttctt 30579449  T

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Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 680
Target Start/End: Original strand, 37381856 - 37381906
Alignment:
Q  632 tatagtcaatttgatatt--atatatgaaactctataaaaactcgtgcatc 680  Q
    ||||||||||||||||||  ||||||||||||||| |||||| ||||||||    
T  37381856 tatagtcaatttgatattttatatatgaaactctacaaaaacacgtgcatc 37381906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 15905725 - 15905636
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||||||| || ||||| |||| |||||  |||||||  ||||| ||||||||| || |||||| |||||| ||||||| ||||||    
T  15905725 tattggcttgggacctgggagtgtgctcctcct-taggtctcaggttcgattctccctaatgtcaatttgggtgggttaatttagcttctt 15905636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 20335883 - 20335793
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||  | ||||| |||| ||||||||||||||  ||||| ||||| |   || |||||| | |||||||||||||||||||    
T  20335883 tattggcttgggacttgggagtgtgctcctcctcgaggtctcaggttcgattctcaccgatgtcaatttggatgggctaatttaacttctt 20335793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 45229077 - 45228987
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||| |||||| |||||||| ||||||| || ||||| |   ||||| ||||| | |||| ||||||| ||||||||||||| ||||||    
T  45229077 tattggtttgggacctaggagtgtgcttcttcttgaggttttaggttcgattctctccagtgtcaatttaagtgggctaatttagcttctt 45228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 3401067 - 3401108
Alignment:
Q  156 tcatgtggagacgataaacttactactttattacttggtacg 197  Q
    |||| ||||||||||||| |||||||||||||||||| ||||    
T  3401067 tcatatggagacgataaaattactactttattacttgttacg 3401108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 5934147 - 5934228
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    |||||||||||||| ||||| |||| ||||| ||||| ||  ||||| ||| | || ||| |||||||||||| ||||||||    
T  5934147 ttggcttgggatctgggagtgtgctcctccttgaggtttcatgttcgattccctctggtgtcaatttaggtggactaattta 5934228  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 7309397 - 7309469
Alignment:
Q  71 ggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| |||| |||||||||||||| |||||| ||||| |  ||| ||||||| ||||||||||||| ||||||    
T  7309397 ggagtgtgctcctcctcgaggtctcaagttcgattctctc-cgtgtcaatttaagtgggctaatttagcttctt 7309469  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 29075797 - 29075895
Alignment:
Q  46 cctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||| |||||||||||||||| ||||| |||| ||||||||| ||||  ||||| ||||| || ||| |||||||| |||||||||||| ||||||    
T  29075797 cctagtggtattggcttgggatctgggagtgtgctcctcctcgagatctcatgttcgattctctctggtgccaatttagatgggctaatttagcttctt 29075895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 16773811 - 16773921
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||||||||  || ||| ||||| ||||||| || ||||| |||| ||||||||||||||  ||||| ||||| ||  || |||||||||||||||||    
T  16773811 cacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaa 16773910  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  16773911 tttagcttctt 16773921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 28285271 - 28285366
Alignment:
Q  49 agtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||| ||||| | | ||||||||| |||||| |||| ||| ||||| ||||  |||||| |||||| |||||||||||||| ||||||    
T  28285271 agtgatattggcatgggaccgaagagtttgctcctcctcaaggtatcgggttcgattctttctagtgtcaatttgggtgggctaatttagcttctt 28285366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 17028336 - 17028226
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||||||||||  |||||| ||||||  | ||||| |||| |||||| |||||||  ||| | ||| | |||||| |||||||||||||||||    
T  17028336 cacttgggttgacctagttgtattgggttgggacttgggagtgtgctcctcctcaaggtctcaggtttgattccctctagtgtcaatttaggtgggctaa 17028237  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  17028236 tttagcttctt 17028226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 21589292 - 21589402
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||| ||| ||||||||||||| || ||||| |||| |||||||| |||||  ||||| ||| | || ||| ||||||||||||||||     
T  21589292 cacttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcgattccctctggtgccaatttaggtgggctag 21589391  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  21589392 tttagcttctt 21589402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 30883275 - 30883171
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| ||||  |||||| ||||||||||||| || ||||| |||| |||||| ||||||| |||||  ||||| | |||| |||||| |||||    
T  30883275 aaacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttcaattctcaccagtgtcaatttgggtgg 30883176  T
Q  129 gctaa 133  Q
    |||||    
T  30883175 gctaa 30883171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 84851 - 84938
Alignment:
Q  57 tggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||||||| ||||| |||| |||||| ||||||| |||||| |||||||  ||| || | | |||||||||||||| ||||||    
T  84851 tggcttgggatctgggagtgtgctcctcctcaaggtctcaagttcgattctccccggtgccattatgggtgggctaatttagcttctt 84938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 16436617 - 16436730
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    ||||||||||| |||| ||||||| ||||||||||||| || ||||| |||| |||||| |||||||  ||||| || || | |||  ||||||  |||     
T  16436617 aaactcacttgggttggcctagtggtattggcttggga-cttggagtgtgctcctcctcaaggtctcatgttcgattttcac-agtatcaatttgagtga 16436714  T
Q  129 gctaatttaacttctt 144  Q
    ||||||||||||||||    
T  16436715 gctaatttaacttctt 16436730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 29173529 - 29173604
Alignment:
Q  69 taggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||| |||| ||||||||||| ||  ||||| || || || ||| ||||||||||||||||||||| ||||||    
T  29173529 taggagtgtgctcctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagcttctt 29173604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 4793088 - 4793042
Alignment:
Q  98 gttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| ||||||| |||| ||||||||||||||||||||| ||||||    
T  4793088 gttcgattctccccagtgccaatttaggtgggctaatttagcttctt 4793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 12877697 - 12877807
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||||||||  ||||||  ||||| ||||||| | ||||| || |||||||| | |||||  ||||| ||||| || ||   ||||||||||||||||    
T  12877697 cacttgagttggtctagtggcattggtttgggatttgggagtgtgtttctcctcaatgtctcaggttcgattctctctggtactaatttaggtgggctaa 12877796  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  12877797 tttagcttctt 12877807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 22020920 - 22020831
Alignment:
Q  48 tagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    ||||| |||| ||||||||||| ||||| |||| ||||| || |||||   |||| ||||| | ||||  ||||||||||||||||||||    
T  22020920 tagtggtattagcttgggatctgggagtgtgctcctccttgaagtctcagattcgattctctccagtgttaatttaggtgggctaattta 22020831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 30000137 - 30000230
Alignment:
Q  51 tgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||| |||||||||||||  ||||| |||  ||||||||||||||  |||||  |||| ||  || ||||||| ||||| ||||||||||||||    
T  30000137 tgattttggcttgggatccgggagtatgcacctcctcgaggtctcaggttcgactctctctgatgccaatttaagtgggttaatttaacttctt 30000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 33709679 - 33709603
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||||||||||| |||||||||| ||||  |||||||| |||||| ||| | || ||| |||||| ||||||||||    
T  33709679 ttggcttgggatcttggagtttgctcctcc-agaggtctcaagttcgattccctctggtgccaatttcggtgggctaa 33709603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 2667862 - 2667976
Alignment:
Q  30 aactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtggg 129  Q
    |||||| ||| |||| ||| ||| |||||||||||||||| ||||| ||||  |||||||||||||  ||||| || || |||||| |||||||||||||    
T  2667862 aactcatttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcgaggtctcaggttcgattatctctagtgtcaatttaggtggg 2667961  T
Q  130 ctaatttaacttctt 144  Q
    ||| |||| ||||||    
T  2667962 ctagtttagcttctt 2667976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 14339634 - 14339724
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||| | ||||| |||| |||||| | |||||  ||||| |||||||||||| ||||| ||||||||||||||| ||||||    
T  14339634 tattggcttgggatttgggagtgtgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttctt 14339724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 47454689 - 47454579
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| ||||  |||||| |||||||||| ||||| ||||| |||| ||||||||||||||  ||||| ||||||| | || ||||||||||||| ||     
T  47454689 cacttgggttgttctagtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttag 47454590  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  47454589 tttagcttctt 47454579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 30510271 - 30510168
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||| ||| || |||||||||| |||||||| |||| || |||||||||||  ||||| ||||| |||||| |||| || |||||||||    
T  30510271 cacttgggttgtcctggtggtactggcttgggacctaggagtatgctccttctcgaggtctcaggttcgattctctctagtgtcaatctaagtgggctaa 30510172  T
Q  134 ttta 137  Q
    ||||    
T  30510171 ttta 30510168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 36720380 - 36720495
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| ||||  || ||| |||||||||||||| | ||||| |||| ||||||||||| ||  ||||| ||||| |||||| ||||||||||||    
T  36720380 aaacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttaggtgg 36720479  T
Q  129 gctaatttaacttctt 144  Q
    |||  |||| ||||||    
T  36720480 gctggtttagcttctt 36720495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 32651504 - 32651403
Alignment:
Q  40 agttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaac 139  Q
    ||||| ||||||| ||||||||||||| || ||||| |||| |||||| || ||||   |||| ||||| |||||| |||||||| ||||||| ||||||    
T  32651504 agttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattctctctagtgtcaatttagatgggctagtttaac 32651405  T
Q  140 tt 141  Q
    ||    
T  32651404 tt 32651403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 52770026 - 52769945
Alignment:
Q  63 gggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||| ||||| |||| ||||| ||||||||  ||||| |||||  ||||| ||||||||||||||||||||| ||||||    
T  52770026 gggatctgggagtgtgctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttctt 52769945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 8051213 - 8051328
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||| ||| ||||||||||||| || | ||| ||||||||||||||||||| |||||| ||| | |  ||| |||||||| |||    
T  8051213 aaacccacttgggttggcctggtggtattggcttgggacctggcagtatgcttctcctcgaggtctcaagttcgattccctccggtgccaatttagttgg 8051312  T
Q  129 gctaatttaacttctt 144  Q
    |||  |||| ||||||    
T  8051313 gctcgtttagcttctt 8051328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 10499186 - 10499071
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||| ||| |||||||||||||||| ||||| ||||  |||| ||||||||  ||||| ||||| |   || |||||| |||||    
T  10499186 aaacccacttgggttggcctggtggtattggcttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctccgatgtcaatttgggtgg 10499087  T
Q  129 gctaatttaacttctt 144  Q
    ||||||||| ||||||    
T  10499086 gctaatttagcttctt 10499071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 44743904 - 44743817
Alignment:
Q  57 tggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||||||| ||||| |||| ||||||||||||||  ||||| || || | |||| |||||| |||||| ||||||| ||||||    
T  44743904 tggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattatctccagtgccaatttgggtgggttaatttagcttctt 44743817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 51903943 - 51903840
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    ||||||||  || |||||||||||||||| ||||| |||| ||||||| ||||||  ||||| ||||| |  ||| ||||||  ||||||||||||| ||    
T  51903943 gttgacctgttggtattggcttgggatctgggagtgtgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatttagct 51903844  T
Q  141 tctt 144  Q
    ||||    
T  51903843 tctt 51903840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 4222145 - 4222255
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| | ||||| |||||||||||||||| ||||| |||| |||||| | ||||   ||||| ||||| || ||| ||||||||||| | ||     
T  4222145 cacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggtgtcaatttaggtgagttag 4222244  T
Q  134 tttaacttctt 144  Q
    |||||||||||    
T  4222245 tttaacttctt 4222255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 19716223 - 19716309
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttc 142  Q
    ||||||||||| |  ||||| |||| |||||| |||||||  ||||| |||||||  |||||||||| |||||||||||||| ||||    
T  19716223 ttggcttgggaccatggagtgtgctcctcctcaaggtctctggttcgattctccccggtgacaatttgggtgggctaatttagcttc 19716309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 31789042 - 31788984
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggt 92  Q
    |||||| |||| ||||||| |||||||||||||||| ||||| |||| |||||||||||    
T  31789042 cacttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctcgaggt 31788984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 10445190 - 10445101
Alignment:
Q  55 attggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||| || ||||| |||| ||||||||||||||  ||||| ||||| || |||  |||||  ||||||||||||| ||||||    
T  10445190 attggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatttagcttctt 10445101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 31520682 - 31520574
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||| |||  ||||||||||||||| ||||| |||| |||||||||||||   ||| | ||||| | |||| ||||||  ||||    
T  31520682 aaacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctctccagtgtcaatttgagtgg 31520583  T
Q  129 gctaattta 137  Q
    |||||||||    
T  31520582 gctaattta 31520574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 8075192 - 8075089
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    |||| ||||||| ||| |||||||||  | ||||| |||| |||||| |||| ||  ||||| ||| | |||||| |||||| |||||||||||||| ||    
T  8075192 gttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtttcaggttcgattccctctagtgtcaatttgggtgggctaatttagct 8075093  T
Q  141 tctt 144  Q
    ||||    
T  8075092 tctt 8075089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 28531110 - 28531027
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    |||||||||||||||| ||||| |||| |||||||||||||   | ||  ||||| || ||| |||||| ||||||||||||||    
T  28531110 tattggcttgggatctgggagtatgctcctcctcgaggtcttaggctcaattctctctggtgtcaatttgggtgggctaattta 28531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 4844563 - 4844473
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| |||||||||| ||||| |||| ||||||||||||||  | ||| ||||| |  ||| ||||||  ||||||||||||| ||||||    
T  4844563 tattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttctt 4844473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 4870259 - 4870169
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| |||||||||| ||||| |||| ||||||||||||||  | ||| ||||| |  ||| ||||||  ||||||||||||| ||||||    
T  4870259 tattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttctt 4870169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 39042027 - 39041954
Alignment:
Q  59 gcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    ||||||||||| |||||||||| ||||  |||||||| |||||| ||||| || ||| |||||| ||||||||||    
T  39042027 gcttgggatcttggagtttgctcctcc-agaggtctcaagttcgattctctctggtgccaatttcggtgggctaa 39041954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 14186652 - 14186748
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggct 131  Q
    |||||| |||| ||||||| ||||| ||||||| || ||||| |||| |||||| |||||||  ||||| ||||| |  ||| |||||||||||||||    
T  14186652 cacttgggttggcctagtggtattgtcttgggacct-ggagtgtgctcctcctcaaggtctcaggttcgattctctccggtgtcaatttaggtgggct 14186748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 25289892 - 25289816
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||||||||||| |||||||||| ||||  ||||||||  ||||| ||| | |||||| |||||| ||||||||||    
T  25289892 ttggcttgggatcttggagtttgctcctcc-agaggtctcaggttcgattccctctagtgccaatttcggtgggctaa 25289816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 1435068 - 1435177
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| | ||||| || ||||||||||| ||||||| ||||||||||| ||||||| |||||| ||||| || ||| |||||| ||||||||||    
T  1435068 cacttgggttggcatagtggtactggcttgggatttaggagtgtgcttctcctcaaggtctc-agttcgattctctctggtgtcaatttgggtgggctaa 1435166  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  1435167 tttagcttctt 1435177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 33962856 - 33962746
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| |||| ||||||||| |||||| || ||||| |||| ||||||||| |||||  |||| |||||| ||||| |||||||||||| ||||    
T  33962856 cacttgggttggcctaatgatattggtttgggaactgggagtgtgctcctcctcgagatctcggattcgattctccttagtgccaatttaggtggactaa 33962757  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  33962756 tttatcttctt 33962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 23052588 - 23052492
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    |||| ||| ||| |||||||||||||  | ||||| ||||||||||| |||||||  ||||| |||||||||||| || ||| ||||||||||||||    
T  23052588 gttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcgattctccctagtgccagtttgggtgggctaattta 23052492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 39714989 - 39715099
Alignment:
Q  27 cgaaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggt 126  Q
    |||||| |||||| |||| | | ||| ||||| ||||||| || ||||| |||| ||||||||||||||  ||||| ||||||| ||   ||||||||||    
T  39714989 cgaaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccccagcaccaatttaggt 39715088  T
Q  127 gggctaattta 137  Q
    |||||||||||    
T  39715089 gggctaattta 39715099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 3001378 - 3001486
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    ||||||||||| |||| ||||||| ||||| |||| ||||||||||| |||| ||||| ||| ||||  ||||| || || || ||| || |||| ||||    
T  3001378 aaactcacttgggttggcctagtggtattgacttgagatctaggagtgtgctcctccttgagatctcaggttcgattatctctggtgccagtttatgtgg 3001477  T
Q  129 gctaattta 137  Q
    |||||||||    
T  3001478 gctaattta 3001486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 25637182 - 25637265
Alignment:
Q  61 ttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||| ||||| |||| || |||||||||||  ||||| ||||| |   || ||||||||||||||||||||||||||||    
T  25637182 ttgggatctgggagtgtgctccttctcgaggtctcaggttcggttctctccgatgccaatttaggtgggctaatttaacttctt 25637265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 37480074 - 37480189
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||| ||| ||||||||||||| ||  |||| |||| |||||| |||||||  ||||| |||||||  ||  |||||| |||||    
T  37480074 aaacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgg 37480173  T
Q  129 gctaatttaacttctt 144  Q
    ||||||||| ||||||    
T  37480174 gctaatttagcttctt 37480189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 42327467 - 42327364
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| ||||||||||||| || ||||| |||| |||||| |||||||  ||||| |||||    ||| |||||| ||||||||||    
T  42327467 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaa 42327368  T
Q  134 ttta 137  Q
    ||||    
T  42327367 ttta 42327364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 12086201 - 12086091
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    ||||| ||||| ||| ||| ||||||||||||| || | ||| |||| |||||| |||||||| ||||| ||| | |  |||  ||||||||||||||||    
T  12086201 cacttaagttggcctggtggtattggcttgggacctggaagtgtgctcctcctcaaggtctcgggttcgattccctccggtgctaatttaggtgggctaa 12086102  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  12086101 tttagcttctt 12086091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 12517803 - 12517716
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||||| || |||||||||| |||||| |||||||  ||| | |||||||| ||| ||| || |||||||||||||| ||||||    
T  12517803 ttggcttgggaccttggagtttgctcctcctcaaggtctcatgtttgattctccctggtgccaa-ttgggtgggctaatttagcttctt 12517716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 21503451 - 21503420
Alignment:
Q  157 catgtggagacgataaacttactactttatta 188  Q
    ||||||||||||||||||||||||||||||||    
T  21503451 catgtggagacgataaacttactactttatta 21503420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 30359680 - 30359766
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttct 143  Q
    ||||||||||| || ||||| |||| |||||| ||||||| | |||| ||||||| |||| |||||| ||||||||| |||| |||||    
T  30359680 ttggcttgggaccttggagtgtgctcctcctcaaggtctc-atttcgattctccccagtgccaatttgggtgggctagtttagcttct 30359766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 42602553 - 42602668
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| ||||||| ||||||||||||| || ||||| |||| || ||| ||||||   ||| | ||||| |  ||| |||||| |||||    
T  42602553 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgg 42602652  T
Q  129 gctaatttaacttctt 144  Q
    ||||||||| ||||||    
T  42602653 gctaatttagcttctt 42602668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 42860353 - 42860420
Alignment:
Q  35 acttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcg 102  Q
    |||||||||| ||| ||||||||| |||| || || ||||| |||| |||||||||||||| ||||||    
T  42860353 acttgagttggcctggtgatattgacttgagacctgggagtgtgctcctcctcgaggtctcaagttcg 42860420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 3677405 - 3677351
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctc 108  Q
    ||||||||| ||||||| |||| ||||||||||||||||||  |||||| |||||    
T  3677405 tattggcttaggatctaagagtatgcttctcctcgaggtcttaagttcgattctc 3677351  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 19016055 - 19016145
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||| ||  | ||||| |||| |||||||||||||| |||| | |||||||  ||| ||||||| || |||||||||| ||||||    
T  19016055 tattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgattctccccggtgccaatttaagtaggctaatttagcttctt 19016145  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 21213793 - 21213871
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggcta 132  Q
    ||||||||||||| || ||||| || | ||||| ||||||||  ||||| |||||||  ||| ||||||||||||||||    
T  21213793 tattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgggcta 21213871  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 11062364 - 11062425
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctc 95  Q
    |||||| |||| ||||||||||||||||||| |  | ||||| ||||||||||| |||||||    
T  11062364 cacttgggttggcctagtgatattggcttggaacttgggagtgtgcttctcctcaaggtctc 11062425  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 11251105 - 11251198
Alignment:
Q  48 tagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaactt 141  Q
    ||||| |||||||||||||  | | ||| |||| |||||| |||||||  ||| | ||||| || ||| ||||||||||| |||||||||||||    
T  11251105 tagtggtattggcttgggacttggaagtgtgctcctcctcaaggtctcaggtttgattctctctggtgtcaatttaggtgtgctaatttaactt 11251198  T

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Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 3715469 - 3715566
Alignment:
Q  47 ctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||| ||||| |||| ||||| ||||| |||||||| |||||||||| |||||| ||||| | |||| ||||||||||||||| ||||| ||||||    
T  3715469 ctagtggtattgacttgagatctgggagtatgcttctcgtcgaggtctcaagttcgattctctccagtgtcaatttaggtgggctgatttagcttctt 3715566  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 21418481 - 21418584
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaact 140  Q
    |||| ||| ||| |||||||||||||  | ||||| |||| |||||| | ||||| |||||| |||||||||||| ||||| ||||||||||||||| ||    
T  21418481 gttggcctggtggtattggcttgggacttgggagtgtgctcctcctccatgtctcaagttcgattctccctagtgccaattaaggtgggctaatttagct 21418580  T
Q  141 tctt 144  Q
    ||||    
T  21418581 tctt 21418584  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 6758494 - 6758384
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||| ||| ||||||||| |||| | ||||| |||| | |||||||||||| || ||| ||||| || ||| |||||||||||||| ||    
T  6758494 cacttgtgttggcctggtggtattggcttaggatttgggagtgtgctccacctcgaggtctcaagatcgattctctctggtgtcaatttaggtgggcaaa 6758395  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  6758394 tttagcttctt 6758384  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 24641242 - 24641152
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| |||||||||| ||||| |||| ||||||||||| |   ||||| ||||||  | || ||||||||||||||||||||||||||||    
T  24641242 tattgacttgggatctgggagtgtgctcctcctcgaggtttaaggttcgattctcctcactgccaatttaggtgggctaatttaacttctt 24641152  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 12188380 - 12188287
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaattt 122  Q
    |||| |||||| |||| ||||||| ||||||||||||| || ||||| |||| |||||| |||| || |||||| ||||| |||||| ||||||    
T  12188380 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattctctctagtgccaattt 12188287  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 24507613 - 24507498
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    ||||||| ||| |||| ||||||| | ||||||||||| || |||||||||| |||||| |||||| | ||||  ||||| |  ||  ||||||||||||    
T  24507613 aaactcatttgggttggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtctagggttcaattctctccggtatcaatttaggtgg 24507514  T
Q  129 gctaatttaacttctt 144  Q
    | || |||||||||||    
T  24507513 gttagtttaacttctt 24507498  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 33549103 - 33549218
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| ||||  || ||| ||||||||||||| || ||||| |||| ||||||||||||||  ||||| ||||| |   || |||||||||||     
T  33549103 aaacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtga 33549202  T
Q  129 gctaatttaacttctt 144  Q
    ||||||||| ||||||    
T  33549203 gctaatttagcttctt 33549218  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 18263890 - 18263954
Alignment:
Q  80 ttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||| |||||| |  ||||| ||||||| |||| ||||||||||||||||||||| ||||||    
T  18263890 ttctccttgaggtcccaggttcgattctccccagtgccaatttaggtgggctaatttagcttctt 18263954  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 8037039 - 8037078
Alignment:
Q  158 atgtggagacgataaacttactactttattacttggtacg 197  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  8037039 atgtggagacggtaaacttactactttattacttgttacg 8037078  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 13441104 - 13441171
Alignment:
Q  77 tgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||| |||| ||||||||| |||||| |||| |  |||| ||||||| ||||||||||||||||||||    
T  13441104 tgctcctccacgaggtctcaagttcgattcttctcagtgccaatttaagtgggctaatttaacttctt 13441171  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 346555 - 346644
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| ||||||| || ||||| |||||||||||||||||||  ||||| ||||| |  ||| ||||||| || |||||||||| ||||||    
T  346555 tattgacttgggacct-ggagtgtgcttctcctcgaggtctcatgttcgattctcacccgtgtcaatttaagtaggctaatttatcttctt 346644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 1056757 - 1056647
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||||||||||| ||||||| |||||  | ||||| ||||  ||||| |||| |  |||||| ||||| || ||| ||| ||||||||| |||    
T  1056757 cacttgggttgacctagtggtattggcctgggacttgggagtatgctcatcctcaaggttttaagttcgattctctctggtgccaagttaggtgggttaa 1056658  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  1056657 tttagcttctt 1056647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 10338251 - 10338185
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctc 95  Q
    ||||||||||| |||| | | ||| ||||||||||||| |||||||| |||| |||||| |||||||    
T  10338251 aaactcacttgggttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaaggtctc 10338185  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 20213057 - 20213155
Alignment:
Q  46 cctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||| |||  |||||||| || ||||| |||| |||||| | |||||  ||||| ||| | |||||| |||||| |||||||||||||| ||||||    
T  20213057 cctagtggtatacgcttgggacctgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 20213155  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 22107080 - 22107178
Alignment:
Q  46 cctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||| |||  |||||||| || ||||| |||| |||||| | |||||  ||||| ||| | |||||| |||||| |||||||||||||| ||||||    
T  22107080 cctagtggtatacgcttgggacctgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 22107178  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 6776682 - 6776613
Alignment:
Q  31 actcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagtt 100  Q
    ||||||||| |||| ||| ||| |||||||||||||||| || || |||| |||||||| ||||| ||||    
T  6776682 actcacttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctcgatgtctcaagtt 6776613  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 11448890 - 11448966
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||||||||||| |||||||||| ||||  ||||||||  ||||| ||||| || ||| |||||| ||||||||||    
T  11448890 ttggcttgggatcttggagtttgctcctcc-agaggtctcaggttcgattctctctggtgccaatttcggtgggctaa 11448966  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 16405106 - 16405198
Alignment:
Q  51 tgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||| |||||| || ||||| |||||||||||||||||||   |||| ||||| |  ||| |||||||||| | |||||||| ||||||    
T  16405106 tgatattggtttgggacctgggagtgtgcttctcctcgaggtctcagtttcgattctcacctgtgtcaatttaggt-gactaatttagcttctt 16405198  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 7949532 - 7949416
Alignment:
Q  28 gaaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtg 127  Q
    ||||| |||||| | || ||||| | ||||||||||||| || ||||| |||| |||||| |||||||  ||||| ||||| || ||| |||||||||||    
T  7949532 gaaacccacttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtg 7949433  T
Q  128 ggctaatttaacttctt 144  Q
    |||||||||| ||||||    
T  7949432 ggctaatttagcttctt 7949416  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 39509097 - 39509177
Alignment:
Q  57 tggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    ||||||||||||| ||||| |||| ||||||||||||||  ||||| ||||||| |||| ||||||||||||| |||||||    
T  39509097 tggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctccccagtggcaatttaggtgggttaattta 39509177  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 30938278 - 30938181
Alignment:
Q  47 ctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||| |||||| ||||||||| ||||| |||| ||||||||||||||  ||||| ||||||| | || ||||||||||||| || |||| ||||||    
T  30938278 ctagtggtattggtttgggatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttctt 30938181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 4185104 - 4185200
Alignment:
Q  41 gttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    ||||| || ||| |||||| ||||||  || |||| || | |||||||||||||| || ||| |||||||||||| |||||||||||||||||||||    
T  4185104 gttgatctggtggtattggtttgggacttaagagtgtgatcctcctcgaggtctcaagatcgattctccctagtgtcaatttaggtgggctaattta 4185200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 19238649 - 19238546
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||| ||| |||||||||||||  | ||||| |||| ||||||||||||||| ||||| |||||||  ||  |||||| ||||||||||    
T  19238649 cacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctcgggttcgattctccccggtaccaatttgggtgggctaa 19238550  T
Q  134 ttta 137  Q
    ||||    
T  19238549 ttta 19238546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 8030264 - 8030166
Alignment:
Q  46 cctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||| ||| |||||||||  | ||||| |||| |||||| ||||||| |||||| ||| | |||||| |||||| |||||||||||||| ||||||    
T  8030264 cctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaagttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 8030166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 31826613 - 31826723
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| ||| |||||||||| |  |||| |||| |||||| ||||||| |||||| ||| |  ||||| |||||| ||||||||||    
T  31826613 cacttgggttgccctagtggtataggcttgggatttgcgagtgtgctcctcctcaaggtctcaagttcgattccctttagtgtcaatttgggtgggctaa 31826712  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  31826713 tttaccttctt 31826723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 51250600 - 51250484
Alignment:
Q  28 gaaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtg 127  Q
    ||||| |||||| |||| ||| ||| |||||||||||||||| ||||| |||| | |||| || |||| |||||| ||| | |  ||| |||||| ||||    
T  51250600 gaaacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagttcgattccctccggtgccaatttgggtg 51250501  T
Q  128 ggctaatttaacttctt 144  Q
    |||||||||| ||||||    
T  51250500 ggctaatttagcttctt 51250484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 3607031 - 3606984
Alignment:
Q  97 agttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  3607031 agttcgattccccctagtgtcaatttaggtgggctaatttaacttctt 3606984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 55427272 - 55427169
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||| ||| ||||||||||||| || ||||| |||| || |||||||||||  ||||| ||||||   ||| |||||| ||||||||||    
T  55427272 cacttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctcaggttcgattctccgcggtgccaatttgggtgggctaa 55427173  T
Q  134 ttta 137  Q
    ||||    
T  55427172 ttta 55427169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 21660196 - 21660106
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| |||| ||||| ||||| ||||  ||||||||||||| |||||| || || |||||| |||||||||| | |||||||| ||||||    
T  21660196 tattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttaggtagactaatttagcttctt 21660106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 21668960 - 21668870
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| |||| ||||| ||||| ||||  ||||||||||||| |||||| || || |||||| |||||||||| | |||||||| ||||||    
T  21668960 tattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttaggtagactaatttagcttctt 21668870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 28635700 - 28635810
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||| ||| || || |||||||||| ||||| |||| ||||| |||||||   ||||| ||||| || ||| |||||| ||||||||||    
T  28635700 cacttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctctctggtgccaatttgggtgggctaa 28635799  T
Q  134 tttaacttctt 144  Q
    |||| ||||||    
T  28635800 tttagcttctt 28635810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 47044741 - 47044830
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| ||||||||||  ||||||||| ||||||||||||||  ||||| ||||||| || | |||||||||||| | ||| |||||||||    
T  47044741 tattgacttgggatctgagagtttgctcctcctcgaggtctcaggttcgattctccc-agcgtcaatttaggtggacaaatataacttctt 47044830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 51948504 - 51948594
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| |||||||||||||||| |||  ||||||||||||||  ||||  ||||| | |||| |||||||  ||| |||||||||||||||    
T  51948504 tattgacttgggatctaggagtgtgcccctcctcgaggtctcaggttcaattctctccagtgtcaatttaaatggactaatttaacttctt 51948594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 12793970 - 12793873
Alignment:
Q  47 ctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||||| ||||||  |||| ||||  ||| ||| || |  |||||| ||||| || ||| ||||||||||||||||||||| ||||||    
T  12793970 ctagtgatattggcttcggatctgtgagtgtgctcttccacgaagtattaagttcgattctctctggtgccaatttaggtgggctaatttagcttctt 12793873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 37443706 - 37443806
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||||||||||| |||||||||||||||| |||||    | ||||||||||| ||  ||||| || || || ||| ||||||| |||||||||    
T  37443706 cacttgggttgacctagtggtattggcttgggatctgggagt---gtactcctcgaggtttcatgttcgattatctctggtgccaatttatgtgggctaa 37443802  T
Q  134 ttta 137  Q
    ||||    
T  37443803 ttta 37443806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 22096629 - 22096577
Alignment:
Q  85 ctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    |||||||||||  ||||| |||||||||||| ||||||| |||||||||||||    
T  22096629 ctcgaggtctcaggttcgattctccctagtgccaatttaagtgggctaattta 22096577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 23377974 - 23378070
Alignment:
Q  48 tagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| ||||||||||||| || ||||| |||| |||||| |||||||  ||||| ||||| |||||| ||||||  | |||||| |||| ||||||    
T  23377974 tagtgttattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaatttgagggggctagtttagcttctt 23378070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 37109423 - 37109335
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaattt 122  Q
    |||||| |||| ||||||| ||||||||||||| || ||||| |||| |||||| |||||||  ||||| ||||| || ||| ||||||    
T  37109423 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaattt 37109335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 37720291 - 37720176
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtga-caatttaggtg 127  Q
    |||| |||||| |||| ||| ||| ||||||||||||| || ||||| |||  |||||| ||||| |  ||||| ||||||| || || |||||||||||    
T  37720291 aaacccacttgggttggcctggtgttattggcttgggacctgggagtgtgcccctcctcaaggtcccaggttcgattctccc-agggatcaatttaggtg 37720193  T
Q  128 ggctaatttaacttctt 144  Q
    |||||||||| ||||||    
T  37720192 ggctaatttagcttctt 37720176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 47386841 - 47386753
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||| |||||||  ||||  |||||| || ||||||||  ||||  ||||| |||||| ||||||||||||||||||||| ||||||    
T  47386841 ttggctagggatctgagagtgcgcttcttcttgaggtctcaggttcaattctctctagtgtcaatttaggtgggctaatttagcttctt 47386753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 13015444 - 13015534
Alignment:
Q  47 ctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    |||||| |||||||||||||  | ||||| |||| |||||||| |||||  ||||| ||||| |  ||| ||||||||||||| |||||||    
T  13015444 ctagtggtattggcttgggacttgggagtgtgctcctcctcgaagtctcatgttcgattctctcaggtgtcaatttaggtgggttaattta 13015534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 13901742 - 13901856
Alignment:
Q  30 aactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtggg 129  Q
    |||||||||| ||||  |||||| |||||||||| || || ||||| || | ||||| |||||||| |||||  ||||  ||| ||  ||||||||||||    
T  13901742 aactcacttgggttggtctagtggtattggcttgagacctgggagtgtgttcctccttgaggtctcaagttcaattctatctaatgttaatttaggtggg 13901841  T
Q  130 ctaatttaacttctt 144  Q
     ||||||| ||||||    
T  13901842 ttaatttagcttctt 13901856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 30797700 - 30797734
Alignment:
Q  163 gagacgataaacttactactttattacttggtacg 197  Q
    |||||||||||||||||||||||||||||| ||||    
T  30797700 gagacgataaacttactactttattacttgttacg 30797734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 40284038 - 40283948
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||||  | ||||| ||| ||||||| ||||||   ||| | |||| | | ||| ||||||||||||||||||||||||||||    
T  40284038 tattggcttgggacttgggagtgtgcatctcctcaaggtctaaggtttgattctgcttggtgccaatttaggtgggctaatttaacttctt 40283948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 19602969 - 19603006
Alignment:
Q  159 tgtggagacgataaacttactactttattacttggtac 196  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  19602969 tgtggagacgattaacttactgctttattacttggtac 19603006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 37274510 - 37274421
Alignment:
Q  55 attggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||||||||| || ||||| |||| |||||| ||||||   ||||| ||||| || |||  |||||| ||||||||||||| ||||||    
T  37274510 attggcttgggacctgggagtgtgctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaatttagcttctt 37274421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 38869784 - 38869833
Alignment:
Q  46 cctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctc 95  Q
    ||||||| |||||||||||||||| ||||| |||| |||||| |||||||    
T  38869784 cctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtctc 38869833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 40059030 - 40058954
Alignment:
Q  56 ttggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||||||||||| |||||||||| || || ||||||||  ||||| ||||| || ||| |||||| ||||||||||    
T  40059030 ttggcttgggatcttggagtttgctcct-ctagaggtctcaggttcgattctctctggtgccaatttcggtgggctaa 40058954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 49262702 - 49262653
Alignment:
Q  88 gaggtctcgagttcgcttctccctagtgacaatttaggtgggctaattta 137  Q
    ||||||||  ||||| ||||||| |||| |||||||||||||||||||||    
T  49262702 gaggtctcaggttcgattctccccagtgccaatttaggtgggctaattta 49262653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 15854 - 15739
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| ||||| ||||| ||| ||| |||||||||||||| | ||||| |||| |||||| ||||||| |||| | ||||||   ||| |||||| |||||    
T  15854 aaacccacttaagttggcctggtggtattggcttgggattttggagtatgctcctcctcaaggtctcaagtttgattctccgcggtgccaatttgggtgg 15755  T
Q  129 gctaatttaacttctt 144  Q
    ||||||||| ||||||    
T  15754 gctaatttagcttctt 15739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 15375 - 15285
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||||||||||| || ||||| |||| ||||||||||||||  ||||| ||||| |   || ||||||||||||||||||||| ||||||    
T  15375 tattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttctt 15285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 1752 - 1867
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    ||||||| ||| |||| ||||||| | ||||||||||| || |||||||||| |||||| |||||| | ||||  ||||| |  ||  ||||||||||||    
T  1752 aaactcatttgggttggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtctagggttcaattctctccggtatcaatttaggtgg 1851  T
Q  129 gctaatttaacttctt 144  Q
    | || |||||||||||    
T  1852 gttagtttaacttctt 1867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 41705 - 41602
Alignment:
Q  34 cacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaa 133  Q
    |||||| |||| ||||||| |||||||||| |||||  |||| |||| ||||||||||||||  ||||  ||||| ||  || |||||| ||||||||||    
T  41705 cacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtgggctaa 41606  T
Q  134 ttta 137  Q
    ||||    
T  41605 ttta 41602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 45811 - 45721
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    ||||| ||||||| |||||||| || | ||||| ||||||||  ||||| ||||| || ||| ||||||||||||| || |||||||||||    
T  45811 tattgccttgggacctaggagtgtgttcctccttgaggtctcatgttcgattctctctggtgtcaatttaggtgggttagtttaacttctt 45721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 10218 - 10326
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgg 128  Q
    |||| |||||| |||| |||  ||||||||||||||||||| |||||  || ||||||||| ||||  |||| | ||||| | | || ||||||| ||||    
T  10218 aaacccacttgggttggcctgatgatattggcttgggatctgggagtgcgcctctcctcgaagtcttaagtttgattctctcaaatgccaatttaagtgg 10317  T
Q  129 gctaattta 137  Q
    |||||||||    
T  10318 gctaattta 10326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 11552 - 11606
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttctc 108  Q
    |||||||||||||||| ||||| |||| ||||||||||||||  ||||| |||||    
T  11552 tattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctc 11606  T

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Target: scaffold0115 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 42688 - 42626
Alignment:
Q  82 ctcctcgaggtctcgagttcgcttctccctagtgacaatttaggtgggctaatttaacttctt 144  Q
    |||||| || |||| |||||| |||||  | ||| ||||||||||||||||||||||||||||    
T  42688 ctcctcaagatctcaagttcgattctctatggtgtcaatttaggtgggctaatttaacttctt 42626  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 12188 - 12253
Alignment:
Q  29 aaactcacttgagttgacctagtgatattggcttgggatctaggagtttgcttctcctcgaggtct 94  Q
    ||||||| ||| |||| ||||||| | ||||||||||| || |||||||||| |||||| ||||||    
T  12188 aaactcatttgggttggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtct 12253  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 19899 - 19846
Alignment:
Q  54 tattggcttgggatctaggagtttgcttctcctcgaggtctcgagttcgcttct 107  Q
    |||||||||||||||| ||||| |||| ||||| |||||||| |||||| ||||    
T  19899 tattggcttgggatctgggagtctgctcctccttgaggtctcaagttcgattct 19846  T

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