View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13156_high_2 (Length: 376)
Name: NF13156_high_2
Description: NF13156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13156_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 33449660 - 33450035
Alignment:
| Q |
1 |
attggaaccctactgaaattgtgtaagtagatacaaaatactaaactctacta-gtattcattgactttgattttgataaactatcattataaagannnn |
99 |
Q |
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| T |
33449660 |
attggaaccctactgaaattgtgtaagttgatacaaaatactaaactctactaagtattcattgactttgattttgatacactatcattataaagatttt |
33449759 |
T |
|
| Q |
100 |
nnnnn-ataccgtcatgttgtaatttgactcaaaaatgatgttttggaaaccgaagaaccgtgaaacgattttcatatcgtgacacgattttttaggcag |
198 |
Q |
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| T |
33449760 |
ttttttataccgtcatgttgtaatttgactcaaaaatgatgttttggaaaccgaagaaccgtgacacgattttcatatcgtgacacggttttctaggcag |
33449859 |
T |
|
| Q |
199 |
aatgcaaggttactactggaagcaaatcgtgacatttgacaggcgtgatacgattttaggataaggttgaagtattgtactatgtatgaggctt------ |
292 |
Q |
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| T |
33449860 |
aatgcaaggttactactggaagcaaatcgtgacatttgacatgcgtgatacgattttaggataaggttgaagtattgtactgtgtatgaggcttatcgtg |
33449959 |
T |
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| Q |
293 |
--------------atcgtgacatgatttttacagtatctagacactatttaagcatttaatgttcatttttatag |
354 |
Q |
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| T |
33449960 |
acacgattctgacaatcgtgacatgatttttacagtatctagacactatttaagcatttaacgttcatttttatag |
33450035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 13696252 - 13696135
Alignment:
| Q |
114 |
tgttgtaatttgactcaaaaatgatgttttggaaaccgaagaaccgtgaaacgattttcatatcgtgacacgattttttaggcagaatgcaaggttacta |
213 |
Q |
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| T |
13696252 |
tgttgtaatttgactcaaaaatgaagttttggaaacggaaaaatcgtgacacgattttcataccatgagac-attttttaggcagaatgcaaggttacta |
13696154 |
T |
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| Q |
214 |
ctggaagcaaatcgtgaca |
232 |
Q |
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| T |
13696153 |
catgaagcaaatcgtgaca |
13696135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 29056004 - 29056059
Alignment:
| Q |
175 |
atcgtgacacgattttttaggcagaatgcaaggttactactggaagcaaatcgtga |
230 |
Q |
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| T |
29056004 |
atcgtgacacgattttttgggcataatgcaaggttactacttgaagcaaatcgtga |
29056059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 29055961 - 29056019
Alignment:
| Q |
113 |
atgttgtaatttgactcaaaaatgatgttttggaaaccgaagaaccgtgaaacgatttt |
171 |
Q |
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| T |
29055961 |
atgttgtaatttgactcaaaaattaagttttagaaaccaaagaatcgtgacacgatttt |
29056019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 36574952 - 36574886
Alignment:
| Q |
242 |
cgtgatacgattttaggataaggttgaagtattgtactatgtatgaggcttatcgtgacatgatttt |
308 |
Q |
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| T |
36574952 |
cgtgacacgattttaggataatgttgtagcattgtactatgtacgagacttatcgtgacatgatttt |
36574886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 54740326 - 54740293
Alignment:
| Q |
158 |
cgtgaaacgattttcatatcgtgacacgattttt |
191 |
Q |
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| T |
54740326 |
cgtgacacgattttcatatcgtgacacgattttt |
54740293 |
T |
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