View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13156_high_3 (Length: 339)

Name: NF13156_high_3
Description: NF13156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13156_high_3
NF13156_high_3
[»] chr1 (2 HSPs)
chr1 (1-164)||(25493334-25493497)
chr1 (245-330)||(25493662-25493746)
[»] chr7 (1 HSPs)
chr7 (92-140)||(37381856-37381906)
[»] chr5 (1 HSPs)
chr5 (179-221)||(43550705-43550747)
[»] chr2 (3 HSPs)
chr2 (180-225)||(96173-96218)
chr2 (72-124)||(15253306-15253358)
chr2 (73-140)||(15256086-15256153)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 25493334 - 25493497
Alignment:
Q  1 aaaataaccatcgaaactgagggtccgtgggtggttgacctagagcttatagactaaaagcattttattataactagactccaacttgtatgatgcacga 100  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25493334 aaaataaccatcaaaagtgagggtccgtgggtggttgacctagagcttgtagactaaaagcattttattataactagactccaacttgtatgatgcacga 25493433  T
Q  101 gtttttatagagtttcatatataatatcaaattgactataccatccttaaatgcattatatata 164  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25493434 gtttctatagagtgtcatatataatatcaaattgactataccatccttaaatgcattatatata 25493497  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 25493662 - 25493746
Alignment:
Q  245 aaagaggagtaaattgtaattcattgcgcatnnnnnnncttttaaatcttctttcatgtacaataggagtacattttaattcattg 330  Q
    ||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25493662 aaagacgagtaaattgtaattcattgcgcataaaaaa-cttttaaatcttctttcatgtacaataggagtacattttaattcattg 25493746  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 37381906 - 37381856
Alignment:
Q  92 gatgcacgagtttttatagagtttcatatat--aatatcaaattgactata 140  Q
    |||||||| |||||| |||||||||||||||  ||||||||||||||||||    
T  37381906 gatgcacgtgtttttgtagagtttcatatataaaatatcaaattgactata 37381856  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 43550747 - 43550705
Alignment:
Q  179 caatgatattattgaagaaatcaaattagcatcattctcaata 221  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||    
T  43550747 caatggtattattgaagaaatcaaattagaatcattttcaata 43550705  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 96173 - 96218
Alignment:
Q  180 aatgatattattgaagaaatcaaattagcatcattctcaatatcat 225  Q
    ||||||| |||||||||||||||||||| |||||| | ||||||||    
T  96173 aatgatactattgaagaaatcaaattagaatcatttttaatatcat 96218  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 15253306 - 15253358
Alignment:
Q  72 aactagactccaacttgtatgatgcacgagtttttatagagtttcatatataa 124  Q
    |||||||||| ||||||||   || |||||||||| |||||||||||||||||    
T  15253306 aactagactctaacttgtacattgtacgagtttttgtagagtttcatatataa 15253358  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 15256086 - 15256153
Alignment:
Q  73 actagactccaacttgtatgatgcacgagtttttatagagtttcatatataa-tatcaaattgactata 140  Q
    ||||||||| |||  ||| |||| ||||||||| |||||||||||||||||| ||||||| ||||||||    
T  15256086 actagactctaacccgtacgatgtacgagtttt-atagagtttcatatataagtatcaaaatgactata 15256153  T

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