View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13156_high_5 (Length: 302)

Name: NF13156_high_5
Description: NF13156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13156_high_5
NF13156_high_5
[»] chr1 (4 HSPs)
chr1 (28-207)||(52549348-52549517)
chr1 (28-276)||(15594631-15594891)
chr1 (29-267)||(34467108-34467358)
chr1 (246-276)||(52549323-52549353)
[»] chr2 (10 HSPs)
chr2 (28-273)||(7541823-7542080)
chr2 (28-273)||(14703005-14703262)
chr2 (28-267)||(12258901-12259152)
chr2 (32-270)||(11999009-11999258)
chr2 (32-270)||(12245723-12245973)
chr2 (152-273)||(12234422-12234543)
chr2 (42-150)||(16662441-16662549)
chr2 (32-126)||(43625013-43625107)
chr2 (92-134)||(5446234-5446276)
chr2 (176-273)||(16662306-16662403)
[»] chr4 (5 HSPs)
chr4 (28-273)||(35132053-35132311)
chr4 (42-150)||(30774863-30774971)
chr4 (173-273)||(30775006-30775106)
chr4 (161-240)||(23588080-23588159)
chr4 (161-240)||(23596932-23597011)
[»] chr7 (27 HSPs)
chr7 (29-273)||(6789110-6789366)
chr7 (176-273)||(17267696-17267793)
chr7 (46-270)||(27831192-27831428)
chr7 (44-251)||(8545246-8545465)
chr7 (29-272)||(8575924-8576179)
chr7 (46-273)||(17259856-17260095)
chr7 (163-272)||(8601718-8601827)
chr7 (176-252)||(8570068-8570144)
chr7 (53-240)||(8581322-8581521)
chr7 (173-239)||(8590392-8590458)
chr7 (177-252)||(7878068-7878143)
chr7 (173-272)||(8383191-8383290)
chr7 (55-150)||(29582290-29582385)
chr7 (47-144)||(29578127-29578224)
chr7 (173-272)||(8537790-8537889)
chr7 (158-240)||(8102406-8102488)
chr7 (53-139)||(27846566-27846652)
chr7 (176-273)||(8616438-8616535)
chr7 (150-215)||(8636715-8636780)
chr7 (34-126)||(3146867-3146959)
chr7 (176-272)||(8609674-8609770)
chr7 (44-123)||(10494850-10494929)
chr7 (32-134)||(8590239-8590341)
chr7 (46-126)||(17267554-17267634)
chr7 (44-123)||(13333844-13333923)
chr7 (44-120)||(8667032-8667108)
chr7 (86-150)||(39985301-39985365)
[»] chr5 (1 HSPs)
chr5 (28-150)||(28219515-28219637)
[»] chr8 (2 HSPs)
chr8 (28-278)||(43744413-43744675)
chr8 (68-272)||(12528141-12528357)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 52549517 - 52549348
Alignment:
Q  28 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagga 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52549517 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagctacaacctcatcagga 52549418  T
Q  128 ttaatgcccttgcacaactccttgtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaac 207  Q
    ||||||||||||||||||||||||||||          |||||||||||||| |||||||||||||||||||||||||||    
T  52549417 ttaatgcccttgcacaactccttgtcct----------ttgtacattgggaaacctagaagacccaccaacaaggacaac 52549348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 28 - 276
Target Start/End: Original strand, 15594631 - 15594891
Alignment:
Q  28 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagga 127  Q
    ||||| |||||| || | |||||| ||||||||||| | ||  |||||||||||||| |||||||| |||||||| |||||||| ||| ||||||||||     
T  15594631 aggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacagcctcatcaggg 15594730  T
Q  128 ttaatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 215  Q
    || |||| | ||||||| |||||             ||||  || |||||||| || |||||||||||||||||||||||||||| ||||| ||||| ||    
T  15594731 ttgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcctagaagacccaccaacaatgacaatatcattta 15594830  T
Q  216 ccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcctt 276  Q
    | || ||||| | |||||||||||||  ||||||||| ||||| ||||||||||| |||||    
T  15594831 cactactcttattcatcttagcatcatcaagacaactctcaactatcttcatacaatcctt 15594891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 267
Target Start/End: Complemental strand, 34467358 - 34467108
Alignment:
Q  29 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 128  Q
    |||||||||||  |||||||||| ||||||||||| | || ||||| ||||||||| ||||| || ||||||||| ||||||| ||| |||||||||| |    
T  34467358 ggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcatcagggt 34467259  T
Q  129 taatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 216  Q
    | ||||  ||||| |  |||||            |||| | || || || || || ||||||||||||||||| || || ||||||||| ||||||  ||    
T  34467258 tgatgctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcccccgacaaggacagcatcatgcac 34467159  T
Q  217 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcat 267  Q
     || ||| |||||||||||||||||| |||||||||  |||||||| ||||    
T  34467158 actactcgtgtccatcttagcatcaacaagacaactcacaacaatcctcat 34467108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 276
Target Start/End: Complemental strand, 52549353 - 52549323
Alignment:
Q  246 gacaactttcaacaatcttcatacactcctt 276  Q
    |||||||||||||||||||||||||||||||    
T  52549353 gacaactttcaacaatcttcatacactcctt 52549323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 7541823 - 7542080
Alignment:
Q  28 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagga 127  Q
    ||||||||||||||||||||||||||||||| | |||| || |||| |||||||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  7541823 aggtgtaacatcctgcagcaccaactttggagcgttcttaacgcctccactcaacaatgcagcctgaacagctgccccataagcaacagcctcatcagga 7541922  T
Q  128 ttaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 215  Q
    ||||||| ||||||||| |||||            ||||| ||| || || |||||  |||||||||| |||||||| || |||||||||||||||||||    
T  7541923 ttaatgctcttgcacaagtcctttccattgaaaaagtcctttaatagctgatgtactatgggaatcctcgaagacccgccgacaaggacaacatcatcta 7542022  T
Q  216 ccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactc 273  Q
     | ||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||    
T  7542023 tcatgctcttgtccatattagcatcaataagacagcttccaacaatcgtcatacactc 7542080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 14703005 - 14703262
Alignment:
Q  28 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagga 127  Q
    |||||||| |||||| ||||||||||| ||||||||||  | | ||||||||||||| ||||||||||||||||| |||||||| ||| | ||||||||     
T  14703005 aggtgtaatatcctgaagcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagcttcatcaggg 14703104  T
Q  128 ttaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 215  Q
    |||||||  ||||||||||||||            ||||||||| | ||| ||||| |||||||||| |||||||||||| ||||| |||||||||||||    
T  14703105 ttaatgctgttgcacaactccttcccctggaaaaagtcctgtaataattgctgtactttgggaatccgagaagacccaccgacaagaacaacatcatcta 14703204  T
Q  216 ccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactc 273  Q
    | || |||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  14703205 ctctactcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactc 14703262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 12259152 - 12258901
Alignment:
Q  28 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagga 127  Q
    ||||||||||||||||||| ||||||||||||||||||| ||  ||||||| ||||| |||||||||| ||| || ||| |||| ||| |||||||||||    
T  12259152 aggtgtaacatcctgcagctccaactttggaacattctggatatcttcacttaacaaagcagcctgaatagccgccccaaaagctacagcctcatcagga 12259053  T
Q  128 ttaatgcccttgcacaact------ccttg------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 215  Q
    ||||||| |||||||||||      |||||      |||||||| || || || || ||| ||||||||||||||||||| |||||||||||||||||||    
T  12259052 ttaatgctcttgcacaactctttccccttgaaaaaatcctgtaatagctgctgcactttgagaatcctagaagacccacctacaaggacaacatcatcta 12258953  T
Q  216 ccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcat 267  Q
    |  | ||||||||| | ||||||||  |||||||||| |||||| |||||||    
T  12258952 cattactcttgtccgtgttagcatccgtaagacaactctcaacagtcttcat 12258901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 11999009 - 11999258
Alignment:
Q  32 gtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaa 131  Q
    ||||||||||||| |||||| ||||||||||||| ||   ||||||||||||| ||||| ||||||||||| |||||||| ||| |||||||||| ||||    
T  11999009 gtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacagcctcatcagggttaa 11999108  T
Q  132 tgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccct 219  Q
    ||| |||||||||||||||            ||| ||||| || ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||   |    
T  11999109 tgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggactttggg-atcctagaagatccaccaacaagtacaacatcatctatagt 11999207  T
Q  220 gctcttgtccatcttagcatcaataagacaactttcaacaatcttcataca 270  Q
     |||||||||||||| ||||| |||| |||||| |||||| |||| |||||    
T  11999208 actcttgtccatctttgcatccataatacaactctcaacagtctttataca 11999258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 270
Target Start/End: Complemental strand, 12245973 - 12245723
Alignment:
Q  32 gtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaa 131  Q
    ||||||||||||| |||||| ||||||||||||| ||   ||| ||||||||| ||||| ||||||||||| |||||||| ||| |||| ||||| ||||    
T  12245973 gtaacatcctgcaacaccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagcctcgtcagggttaa 12245874  T
Q  132 tgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccct 219  Q
    ||| ||||||||| |||||            ||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||| ||||||||   |    
T  12245873 tgctcttgcacaattccttcccgttgaaaaagtcctgtaatagctgttggactttgggaatcctagaagatccaccaacaagtacaaaatcatctatagt 12245774  T
Q  220 gctcttgtccatcttagcatcaataagacaactttcaacaatcttcataca 270  Q
     |||||||||||||| ||||| |||| |||||| |||||| |||| |||||    
T  12245773 actcttgtccatctttgcatccataatacaactctcaacagtctttataca 12245723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 273
Target Start/End: Original strand, 12234422 - 12234543
Alignment:
Q  152 tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaac 251  Q
    ||||| || ||||| || || |||||||||||||| ||||| |||| ||||||||| ||||| ||||| || |||||||||||||||||| |||||||||    
T  12234422 tcctgcaatagttgctgcactttgggaatcctagaggacccgccaataaggacaacttcatccaccctacttttgtccatcttagcatcactaagacaac 12234521  T
Q  252 tttcaacaatcttcatacactc 273  Q
    | ||||||||||||||||||||    
T  12234522 tctcaacaatcttcatacactc 12234543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 16662549 - 16662441
Alignment:
Q  42 gcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgca 141  Q
    |||||||||| |||||||||| || |||||||||||||||||  ||||| || |||||||| |||||||| ||| |||||||||| || |||| ||||||    
T  16662549 gcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagcctcatcagggttgatgctcttgca 16662450  T
Q  142 caactcctt 150  Q
    |||||||||    
T  16662449 caactcctt 16662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 43625013 - 43625107
Alignment:
Q  32 gtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagg 126  Q
    ||||||||  |||||||||| ||||||||||||| |||||||| |||||| |  |||||||| |||||||| |||||||| ||| ||||||||||    
T  43625013 gtaacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagg 43625107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 5446276 - 5446234
Alignment:
Q  92 tgaacagctgcgccataagccacaacctcatcaggattaatgc 134  Q
    |||||||| ||||||||||||||| | ||||||||||||||||    
T  5446276 tgaacagcggcgccataagccacagcttcatcaggattaatgc 5446234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 16662403 - 16662306
Alignment:
Q  176 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactc 273  Q
    ||||||||||| || || || ||||| |||| ||||| ||| |  | |||||||||||| | ||| | || |||||| ||||||||||||||||||||    
T  16662403 ggaatcctagacgagcccccgacaagaacaatatcatgtacaccccccttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactc 16662306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 35132053 - 35132311
Alignment:
Q  28 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagga 127  Q
    ||||||||||||||| | |||||||||||||||||| |  ||||||| ||||||||| ||||||||||| ||||| |||||||| ||| ||||||| ||     
T  35132053 aggtgtaacatcctgtaacaccaactttggaacattttttatgcctttactcaacaaagcagcctgaactgctgccccataagctacagcctcatcgggg 35132152  T
Q  128 ttaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 215  Q
    ||||||| |||||||||||||||            ||  || || || || || || |||||||||||||||||||| |||||||| |||||||||||||    
T  35132153 ttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagaccctccaacaagaacaacatcatcta 35132252  T
Q  216 ccc-tgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactc 273  Q
    ||| ||||||||||||||||||||||||| |||||||| || ||  | |||||||||||    
T  35132253 cccttgctcttgtccatcttagcatcaatgagacaactctctacggtattcatacactc 35132311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 30774863 - 30774971
Alignment:
Q  42 gcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgca 141  Q
    ||||||||||||||||  |||||| ||||||||||||||| |  |||||||| |||||||| || | ||| ||  ||||||||||||| |||| ||||||    
T  30774863 gcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgca 30774962  T
Q  142 caactcctt 150  Q
    ||| |||||    
T  30774963 caaatcctt 30774971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 30775006 - 30775106
Alignment:
Q  173 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 272  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||||| || |||||||| | ||| | |||| |||||||||| |||||| |||  |||||||    
T  30775006 ttgggaatcctagaagaaccaccgacaagaacaatatcatctacactactcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacact 30775105  T
Q  273 c 273  Q
    |    
T  30775106 c 30775106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 23588159 - 23588080
Alignment:
Q  161 agttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 240  Q
    |||||||| || |||||||||||||  || ||||||||||| ||||||||||  || ||| |||| ||||||||||||||    
T  23588159 agttgttgaaccttgggaatcctagtggatccaccaacaagaacaacatcatggacactgttcttatccatcttagcatc 23588080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 23597011 - 23596932
Alignment:
Q  161 agttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 240  Q
    |||||||| || |||||||||||||  || || |||||||| ||||||||||| || ||| |||| ||||||||||||||    
T  23597011 agttgttgaaccttgggaatcctagtcgatccgccaacaagaacaacatcatcaacactgttcttatccatcttagcatc 23596932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 273
Target Start/End: Original strand, 6789110 - 6789366
Alignment:
Q  29 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 128  Q
    ||||||||||| ||||||||||| ||||||||| ||| |  |||||| |||||||| |||||||| |||||||| || ||||| ||| |||||||||| |    
T  6789110 ggtgtaacatcttgcagcaccaagtttggaacactcttagagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaacagcctcatcagggt 6789209  T
Q  129 taatgcccttgcacaactccttgtcc------------tgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 216  Q
    | |||| | ||||||| |||||  ||            || || |||||||| || |||||||| ||||||||||||||||||||||||||||||| |||    
T  6789210 tgatgctcatgcacaaatcctttcccatgaaaacttcttgcaatagttgttgcactttgggaattctagaagacccaccaacaaggacaacatcatttac 6789309  T
Q  217 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactc 273  Q
      | ||||||||||||||||| |||| ||||||||| |||||  |||||||||||||    
T  6789310 aatactcttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactc 6789366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 17267696 - 17267793
Alignment:
Q  176 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactc 273  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||  | |||||||||| ||| |||||    
T  17267696 ggaatcctagaagacccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaacaatctccatgcactc 17267793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 270
Target Start/End: Complemental strand, 27831428 - 27831192
Alignment:
Q  46 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaac 145  Q
    |||||| ||||||||||||  |||| | ||||||||||| |||||||| |||||||| ||| |||| ||| ||||||||||||| |||| |||||||||     
T  27831428 caccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaa 27831329  T
Q  146 tcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatct 233  Q
    |||||            ||||   || || || || || ||||||||||| ||||| |||||||||||||||||||||||||  || |||||||||||||    
T  27831328 tcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatccttgaagagccaccaacaaggacaacatcatctatactactcttgtccatct 27831229  T
Q  234 tagcatcaataagacaactttcaacaatcttcataca 270  Q
    |||  ||| | |||||||| |||||| ||| ||||||    
T  27831228 tagagtcagtgagacaactctcaacagtctccataca 27831192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 251
Target Start/End: Original strand, 8545246 - 8545465
Alignment:
Q  44 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcaca 143  Q
    |||||||  ||||| ||||||| | || ||||||||| ||| |||||||| |||||||| |||||||| ||| |||||||||| ||||||| |||||| |    
T  8545246 agcaccatgtttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaacagcctcatcagggttaatgctcttgcata 8545345  T
Q  144 actccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccat 231  Q
    | |||||             |||||||| || |||   || || |||||||||||||| || ||||||||||||||||||||||| || | |||||||||    
T  8545346 attccttccccttaaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccgccaacaaggacaacatcatctacactacccttgtccat 8545445  T
Q  232 cttagcatcaataagacaac 251  Q
    ||||||||||| ||||||||    
T  8545446 cttagcatcaacaagacaac 8545465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 8575924 - 8576179
Alignment:
Q  29 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 128  Q
    |||||||||||  | | |||||| ||||||||||||| | |||||||||||||||| ||||| || ||| | || |||||||| ||| |||||||||| |    
T  8575924 ggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaacagcctcatcagggt 8576023  T
Q  129 taatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 216  Q
    | |||| ||| || || |||||             |||||||| || |||   || || |||||||||||||| ||||||||||||||||||||||||||    
T  8576024 tgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaaggacaacatcatctac 8576123  T
Q  217 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 272  Q
     ||  ||||||||||||||||||||  ||||||| | | |||| | ||||||||||    
T  8576124 actattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacact 8576179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 273
Target Start/End: Original strand, 17259856 - 17260095
Alignment:
Q  46 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaac 145  Q
    |||||| |||||||||||||  | || | |||| ||||| |||||||||||||| || |||||||| ||| |||||||||| || |||| |||||| ||     
T  17259856 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataat 17259955  T
Q  146 tccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatct 233  Q
    |||||             ||||| || ||||| || || || |||||||||||||| ||||||||||||||||||||||| |  ||||||||||| ||||    
T  17259956 tccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaagatccaccaacaaggacaacatcatcaattctgctcttgtcaatct 17260055  T
Q  234 tagcatcaataagacaactttcaacaatcttcatacactc 273  Q
    || ||||| |||||||  | |||||||||| ||| |||||    
T  17260056 taccatcactaagacacttctcaacaatctccatgcactc 17260095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 8601718 - 8601827
Alignment:
Q  163 ttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatc 262  Q
    |||||| || ||||||||||||||||| || |||||||||||| ||||||| || || ||||| || |||| ||||||| ||||||||||||||||| ||    
T  8601718 ttgttgcactttgggaatcctagaagaaccgccaacaaggacagcatcatccacactactcttttcgatctgagcatcactaagacaactttcaacagtc 8601817  T
Q  263 ttcatacact 272  Q
    |  |||||||    
T  8601818 tctatacact 8601827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 8570068 - 8570144
Alignment:
Q  176 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaact 252  Q
    |||||||||||||| |||||||||||||||||||||||||| ||  |||| |||||||||||||||  |||||||||    
T  8570068 ggaatcctagaagaaccaccaacaaggacaacatcatctacactattcttttccatcttagcatcagcaagacaact 8570144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 8581322 - 8581521
Alignment:
Q  53 tttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactccttg- 151  Q
    ||||||||| ||| |||||||||||| | ||| |||||||||| ||| || |||||||| ||| |||||||||| || |||| |||||| || |||||      
T  8581322 tttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttcc 8581421  T
Q  152 -----------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 240  Q
               |||||||| || |||   || || |||||||||||||| |||||||||||||||||||||||||| || | | ||||||||||||||||    
T  8581422 cctggaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaaggacaacatcatctacactacccctgtccatcttagcatc 8581521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 8590392 - 8590458
Alignment:
Q  173 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcat 239  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||  || ||||||||||||||||||    
T  8590392 ttgggaatcctagaagaaccaccaacaagtacaacatcatctacaatgttcttgtccatcttagcat 8590458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 7878143 - 7878068
Alignment:
Q  177 gaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaact 252  Q
    |||||||||| || ||||||||||| ||||||||||||||  || ||||||||||| |||||||| ||||||||||    
T  7878143 gaatcctagatgatccaccaacaagtacaacatcatctacattgttcttgtccatcatagcatcagtaagacaact 7878068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 8383290 - 8383191
Alignment:
Q  173 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 272  Q
    ||||||||||| ||||| ||||| |  || |||||||||||||| || ||||||| ||||||||||||| ||||||| || |||||| ||| ||||||||    
T  8383290 ttgggaatcctcgaagaaccaccgatgagaacaacatcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacact 8383191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 29582385 - 29582290
Alignment:
Q  55 tggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt 150  Q
    ||||||||||| |||||||||| ||| ||| |||||||| |||||||| |||||||| ||| |||||||||| || |||| | ||||||| |||||    
T  29582385 tggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatcctt 29582290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 29578224 - 29578127
Alignment:
Q  47 accaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaa 144  Q
    ||||| ||||||||||||| |||||| ||| ||||||| |||||||| |||||||| |||||||| ||| |||| ||||| || |||| | |||||||    
T  29578224 accaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcagggtttatgctcatgcacaa 29578127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 8537790 - 8537889
Alignment:
Q  173 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 272  Q
    ||||||||||||||||| |||||||| || ||||||||||| |  || ||  ||||||||||||||||| ||| |||||| | |||| | ||||||||||    
T  8537790 ttgggaatcctagaagagccaccaactagtacaacatcatccatactactactgtccatcttagcatcattaaaacaactcttaacagttttcatacact 8537889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 8102406 - 8102488
Alignment:
Q  158 aacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 240  Q
    |||||||| || || |||||||||||||  || ||||||||||| ||||||||||  ||  ||||||||||||||||||||||    
T  8102406 aacagttgctgaactttgggaatcctagttgaaccaccaacaagaacaacatcatgaactgtgctcttgtccatcttagcatc 8102488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 27846652 - 27846566
Alignment:
Q  53 tttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttg 139  Q
    ||||||||||||| |||| | ||||||||||| |||||||| |||||||| ||| |||| ||| |||||||||| || |||| ||||    
T  27846652 tttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgatgctcttg 27846566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 8616438 - 8616535
Alignment:
Q  176 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactc 273  Q
    ||||||||||| || ||||| ||||| |||| ||||||||| || ||||| || ||||||| |||| ||| |||||| |||||| |||| ||||||||    
T  8616438 ggaatcctagacgagccaccgacaagaacaatatcatctacactactcttctctatcttagaatcattaaaacaactctcaacagtctttatacactc 8616535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 8636780 - 8636715
Alignment:
Q  150 tgtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 215  Q
    |||||||||| ||||| || || || ||||||||||| || |||||||||||||||||||||||||    
T  8636780 tgtcctgtaatagttgctgcacctttggaatcctagaggagccaccaacaaggacaacatcatcta 8636715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 3146867 - 3146959
Alignment:
Q  34 aacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagg 126  Q
    |||||| |||| |||||| ||||||||||| | || | ||||||||||||| ||||| || |||||||| |||||||| ||  ||||||||||    
T  3146867 aacatcttgcaccaccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagcaacggcctcatcagg 3146959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 8609674 - 8609770
Alignment:
Q  176 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 272  Q
    |||||||||||||| || |||||||| ||||||||||||||  |  |||| ||||| | ||||||| ||||||| ||||||||  ||| ||||||||    
T  8609674 ggaatcctagaagaacctccaacaagaacaacatcatctacggttttcttatccatttcagcatcagtaagacatctttcaaccgtctccatacact 8609770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 10494929 - 10494850
Alignment:
Q  44 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatc 123  Q
    |||||||| || || ||||||| || |||||||||||| |  ||||||||||||||||| |||||||| ||| |||||||    
T  10494929 agcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc 10494850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 8590239 - 8590341
Alignment:
Q  32 gtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaa 131  Q
    |||||||| || |||||||| || |||||||||| ||| || ||||  | ||| ||||| ||||||||||| |||||||| ||| ||||||| ||||| |    
T  8590239 gtaacatcttgtagcaccaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacagcctcatctggattga 8590338  T
Q  132 tgc 134  Q
    |||    
T  8590339 tgc 8590341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 17267554 - 17267634
Alignment:
Q  46 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagg 126  Q
    |||||| |||||||||||||  | || | |||| ||||| |||||||||||||| || |||||||| ||| ||||||||||    
T  17267554 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagg 17267634  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 13333923 - 13333844
Alignment:
Q  44 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatc 123  Q
    |||||||| || || ||| ||| || |||||||||||| |  ||||||||||||||||| |||||||| ||| |||||||    
T  13333923 agcaccaagttcgggacagtcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc 13333844  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 8667032 - 8667108
Alignment:
Q  44 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctc 120  Q
    |||||||| || || ||||||| |  |||||||||||| |  ||||||||||||||||| |||||||| ||| ||||    
T  8667032 agcaccaagttggggacattcttacagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctc 8667108  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 39985301 - 39985365
Alignment:
Q  86 gcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt 150  Q
    |||||||||||||| || ||||| || ||| ||||||||||||| |||| |||||| | ||||||    
T  39985301 gcagcctgaacagcagcaccatatgcaacagcctcatcaggatttatgctcttgcatagctcctt 39985365  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 28219515 - 28219637
Alignment:
Q  28 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagga 127  Q
    |||||||||||| |||||||||||||| ||||| || | || ||||||||||||||| |||||||| |||||||| |||||||| ||| ||||||||||     
T  28219515 aggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaacagcctcatcaggg 28219614  T
Q  128 ttaatgcccttgcacaactcctt 150  Q
    ||||||| ||| ||||| |||||    
T  28219615 ttaatgctcttacacaattcctt 28219637  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 43744413 - 43744675
Alignment:
Q  28 aggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagga 127  Q
    ||||| |||||| ||||||||||  |||||||| || | || ||||||||||||||| |||||||| |||||||| |||  ||| ||  ||||||||||     
T  43744413 aggtgcaacatcttgcagcaccacgtttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaactgcctcatcaggg 43744512  T
Q  128 ttaatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 215  Q
    ||||||  ||| ||||| |||||             ||||| || ||||||||||| || ||||||||||| || ||||||||||| |||||||||| ||    
T  43744513 ttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgta 43744612  T
Q  216 ccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttga 278  Q
        ||||||||||||||| |||||| |||||||||| |||||||| |||| |||||| ||||    
T  43744613 tagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttga 43744675  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 12528141 - 12528357
Alignment:
Q  68 atgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactccttg------------tcct 155  Q
    ||||||||||||||||| |||||||||||||| || |||||||| ||| |||||||||| || |||| |||| | |||||||||            ||||    
T  12528141 atgccttcactcaacaaagcagcctgaacagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcct 12528240  T
Q  156 gtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttc 255  Q
    | || || || |  || |||||||||||||| || ||||||||||| |||| ||||||||| || ||||||||||||||||||||  | | |||||||||    
T  12528241 gcaatagctgcttcactttgggaatcctagacgagccaccaacaagtacaatatcatctacactactcttgtccatcttagcatcggtcaaacaactttc 12528340  T
Q  256 aacaatcttcatacact 272  Q
    |||  ||| ||||||||    
T  12528341 aacggtctccatacact 12528357  T

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