View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13157_low_3 (Length: 633)
Name: NF13157_low_3
Description: NF13157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13157_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 61 - 306
Target Start/End: Complemental strand, 11195599 - 11195354
Alignment:
| Q |
61 |
ttactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgactttttgnnnnnnngttaaa |
160 |
Q |
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| T |
11195599 |
ttactaaaatattctttcattatagtgtacgcagctgcaacaactaacatcactgggctagcctctcagctcattgttgactttgtaaaaaaagattaaa |
11195500 |
T |
|
| Q |
161 |
acttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataatttgttcggtgtccttacagatgtatacgagttctgta |
260 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| || |||||| ||||||| || ||||||| |
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| T |
11195499 |
acttcattcaaattgtattgtaaaatttcaagtttaaggtgacaatgtcaactatatgataatttattcaacgtgcttacaaatgtatatgacttctgta |
11195400 |
T |
|
| Q |
261 |
tatatgttaagattcatgattttcctctttgcaacttgcttaatat |
306 |
Q |
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|||||||||||||| || ||| ||||||||||||||||||||||| |
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| T |
11195399 |
tatatgttaagattaatcttttccctctttgcaacttgcttaatat |
11195354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 61 - 306
Target Start/End: Complemental strand, 11155152 - 11154907
Alignment:
| Q |
61 |
ttactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgactttttgnnnnnnngttaaa |
160 |
Q |
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|||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| ||| | |||||||||||| | ||||| |
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| T |
11155152 |
ttactaaaatattctttcattatagtccatgcagctgcaacaactaacatcaccgggctagcctctcaactcattgttgactttgtaaaaaaagattaaa |
11155053 |
T |
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| Q |
161 |
acttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataatttgttcggtgtccttacagatgtatacgagttctgta |
260 |
Q |
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| T |
11155052 |
acttcattcaaattgtattgtaaaatttcaagtttaaggtgacaatgtcaactatatgataatttgttcaacgtgcttataaatgtatatgacttctgta |
11154953 |
T |
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| Q |
261 |
tatatgttaagattcatgattttcctctttgcaacttgcttaatat |
306 |
Q |
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| T |
11154952 |
tatatgtcaaggttaatcttttccctctttgcaacttgcttaatat |
11154907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 11246449 - 11246591
Alignment:
| Q |
58 |
ttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgactttttg----nnnnnn |
153 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
11246449 |
ttatcactaaaatatactttccagatagtgtttgcagctgcaacaactaacatcatcgggctagcttcttctataattgttgactttatgaagaaaaaaa |
11246548 |
T |
|
| Q |
154 |
ngttaaaacttcattcaaattgtattgttaaatttcaagttta |
196 |
Q |
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| T |
11246549 |
agttaaaacttcattcaaattgtattgtgaaatttctagttta |
11246591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 11208271 - 11208096
Alignment:
| Q |
43 |
aatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgact |
142 |
Q |
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|||||||||||||| |||||| |||||| |||||||| ||||||||||||||||||| | ||||||||||| ||| ||||||| ||||||||||| |
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| T |
11208271 |
aatcgttggttaccattattagccaaatattgtttccagacagtgtatgcagctgcaacaggtgacatcaccgggatagtttcttctggaattgttgact |
11208172 |
T |
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| Q |
143 |
ttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataa |
222 |
Q |
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|| | |||||| |||||||||||||||| ||| |||||||| |||| | ||||||||||||||||| |||| |
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| T |
11208171 |
ttat---aaaaagttaaaccttcattcaaattgtactgtgaaatttcatattta-agcgacaatgtcaactatataataa |
11208096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 11315989 - 11316048
Alignment:
| Q |
43 |
aatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaaca |
102 |
Q |
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| T |
11315989 |
aatcattggttaccgttattactaaaatatactttccaggtagtgtatatagctgcaaca |
11316048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 11273259 - 11273084
Alignment:
| Q |
43 |
aatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgact |
142 |
Q |
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|||| ||||||| | |||||| ||||||| ||||||| ||||||||||| | ||||| | |||||||||| ||| ||||||| |||||||||||| |
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| T |
11273259 |
aatcattggttatcattattagcaaaatattgtttccagtcagtgtatgcagttacaacaggtgacatcaccggaatagtttcttctgtaattgttgact |
11273160 |
T |
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| Q |
143 |
ttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataa |
222 |
Q |
| |
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|| | |||||| ||||||||| |||||| || ||||||||| |||| ||||||||||||||||||| |||| |
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| T |
11273159 |
ttat---aaaaagttaaaccttcattcatattgtacggtgaaatttcaaattta-agtgacaatgtcaactatataataa |
11273084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 11169449 - 11169286
Alignment:
| Q |
43 |
aatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgact |
142 |
Q |
| |
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|||||||||||||| |||||| |||||| |||| ||| ||||||||||||| ||||| | |||||||||| ||| ||||||| |||| |||||| |
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| T |
11169449 |
aatcgttggttaccattattagccaaatattgtttcgagacagtgtatgcagctacaacaggtgacatcaccggaatagtttcttctgtaatgattgact |
11169350 |
T |
|
| Q |
143 |
ttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtca |
210 |
Q |
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|| | |||||| |||||||||||||||| || ||||||||| |||| |||||||||||| |
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| T |
11169349 |
ttat---aaaaagttaaaccttcattcaaattgtaccgtgaaatttcaaattta-agtgacaatgtca |
11169286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 11212919 - 11212961
Alignment:
| Q |
398 |
catcgaaaaccacatcaaacgagcattttcaccgattactcat |
440 |
Q |
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| T |
11212919 |
catcgaaaaccacatcaaacgtgcattttaaccaattactcat |
11212961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 11279788 - 11279830
Alignment:
| Q |
398 |
catcgaaaaccacatcaaacgagcattttcaccgattactcat |
440 |
Q |
| |
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| T |
11279788 |
catcgaaaaccacatcaaacgtgcattttaaccaattactcat |
11279830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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