View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13158_high_2 (Length: 539)
Name: NF13158_high_2
Description: NF13158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13158_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 42780891 - 42781419
Alignment:
| Q |
1 |
ttggagttttctctcctgcaaatttcaagtaatgcatatctatctagtgttgaagtatgcacatgtaattaatgctaaaagataaagtaaatctgtattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42780891 |
ttggagttttctctcctgcaaatttcaagtaatgcatatctatctagtgttgaagtatgcacatgtaattaatgctaaaagataaagtaaatcggtattt |
42780990 |
T |
|
| Q |
101 |
tcattctcgaaattgtaaggatcgtg-caatttagtcgatcaaatttgtgaaatatgtagcaatttagtctcttaaattgaagacagtcaatttggtacc |
199 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780991 |
tcattctcgaaattgtaaggatcgaggcaatttagtcgatcaaatttgtgaattatgtagcaatttagtctcttaaattgaagacagtcaatttggtacc |
42781090 |
T |
|
| Q |
200 |
tccgtcaaaatatctctttagtaaaacatctatcaaaattcaaaaccaatgaaagacctgcatattgacttgaacattctcttgcaaacataaaactttt |
299 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
42781091 |
tccgtcaaaatatctctttagtaaaacatccatcaaaattcaaaaccaatgaaagacctgcatattgacttgaatagtctcttgcaaacataaaactttt |
42781190 |
T |
|
| Q |
300 |
agcaacattctggtgaatttgaaaaatgaataaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatttac |
399 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42781191 |
agtaacattctggtgaatttgaaaaatgaataaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatttac |
42781290 |
T |
|
| Q |
400 |
tgactcttacaatttctatgacgaaaatgctgatttactcctaatagaactaaatgacatttattttcacgatggcagttcatcatcctgtccacctgta |
499 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42781291 |
tgactctaacaatttctatgacgaaaatgctgatttactcctaatagaactaaatgacatttattttcacgatggcagttcatcatcctgtccacctgta |
42781390 |
T |
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| Q |
500 |
aatgatccaaaagaacagagtccgttcat |
528 |
Q |
| |
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| T |
42781391 |
aatgatccaaaagaacagattccgttcat |
42781419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 35138530 - 35138604
Alignment:
| Q |
322 |
aaaatgaataaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatt |
396 |
Q |
| |
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| T |
35138530 |
aaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaatt |
35138604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 440
Target Start/End: Complemental strand, 41513890 - 41513780
Alignment:
| Q |
330 |
taaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatttactgactcttacaatttctatgacgaaaatgc |
429 |
Q |
| |
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|||||||| | | ||| |||||||||||||||| | || |||||||| ||||||||| |||||||| ||||| ||| ||| ||| |||| ||||||| |
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| T |
41513890 |
taaattgattgatatttttcaatttaagggactaacttgctattttgcaaatttgaaggactaaattggctgacccttgcaaattcagtgactaaaatgc |
41513791 |
T |
|
| Q |
430 |
tgatttactcc |
440 |
Q |
| |
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||||||||| |
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| T |
41513790 |
ctatttactcc |
41513780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 39777482 - 39777445
Alignment:
| Q |
392 |
aaatttactgactcttacaatttctatgacgaaaatgc |
429 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
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| T |
39777482 |
aaatttactgactcttacaatttccatgactaaaatgc |
39777445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 436
Target Start/End: Complemental strand, 11567654 - 11567565
Alignment:
| Q |
347 |
ttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatttactgactcttacaatttctatgacgaaaatgctgattta |
436 |
Q |
| |
|
|||||||||||||| |||| | |||||| ||||||| | |||||||| || ||| ||||||||||| | ||| |||||||||||||| |
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|
| T |
11567654 |
ttcaatttaagggaatgaattaccattttgtaaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatgctgattta |
11567565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 34618348 - 34618401
Alignment:
| Q |
387 |
gaactaaatttactgactcttacaatttctatgacgaaaatgctgatttactcc |
440 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||||||||||||||| |
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| T |
34618348 |
gaactaaattgcttgactcttacaatttcaaggaccaaaatgctgatttactcc |
34618401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 34745785 - 34745838
Alignment:
| Q |
387 |
gaactaaatttactgactcttacaatttctatgacgaaaatgctgatttactcc |
440 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||||||||||||||| |
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|
| T |
34745785 |
gaactaaattgcttgactcttacaatttcaaggaccaaaatgctgatttactcc |
34745838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 5086003 - 5085967
Alignment:
| Q |
247 |
aatgaaagacctgcatattgacttgaacattctcttg |
283 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||| |
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| T |
5086003 |
aatgaaagacctgcatattgacttgaatagtctcttg |
5085967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 46874610 - 46874566
Alignment:
| Q |
315 |
aatttgaaaaatgaataaattgactaacattgttcaatttaaggg |
359 |
Q |
| |
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|||||||||||||| |||||||||| | |||||||||||||||| |
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| T |
46874610 |
aatttgaaaaatgactaaattgacttaagttgttcaatttaaggg |
46874566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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