View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13158_high_4 (Length: 406)
Name: NF13158_high_4
Description: NF13158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13158_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 8449961 - 8450337
Alignment:
| Q |
13 |
aatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449961 |
aatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaa |
8450060 |
T |
|
| Q |
113 |
attaatagtcacttacccctttttcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaaataagccactccttggga |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8450061 |
attaatagtcacttacccctttctcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaaataagccactccttggga |
8450160 |
T |
|
| Q |
213 |
gacttcaattgctactttgagcaatgaaggaagagtaagcacgaccttctgtatatgcagaaagtcgtacatatttccaccaggcatatattctgagaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8450161 |
gacttcaattgctactttgagcaatgaaggaagggtaagcacgaccttctgtatatgcagaaagtcgtacatatttccaccaggcatatattctgagaaa |
8450260 |
T |
|
| Q |
313 |
aaacatatatgtattgaaaatgacaatagagttcccaatactttttgtctgtaaacaaacaatgaaaaccaagatta |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8450261 |
aaacatatatgtattgaaaatgacaatagagttcccaatactttttgtctgtaaacaaacaatgaaaaccaagatta |
8450337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 48731046 - 48731235
Alignment:
| Q |
16 |
atacacaactacagttttagagtggtttatattgt-tatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaaat |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
48731046 |
atacacaactagagttttagagtggtttatattttatatagtatgatttgaaagcatcaactaagaacaagaacttgtaaaattcaaagaaatgacaaat |
48731145 |
T |
|
| Q |
115 |
taatagtcacttacccctttttcatccatc-----aaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaaataag |
199 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
48731146 |
taatagtcacttacccatttctcatccatcaaaagaaaagattaacagttttgaggtctgtatgaataatgttgttttgatgcaaataag |
48731235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 239 - 375
Target Start/End: Original strand, 48731233 - 48731369
Alignment:
| Q |
239 |
aaggaagagtaagcacgaccttctgtatatgcagaaagtcgtacatatttccaccaggcatatattctgagaaaaaacatatatgtattgaaaatgacaa |
338 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||| |||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
48731233 |
aaggaagagtgagcacaaccttttgtatatgcagatagtcatacatatttccaccatacatatgttctcagaaaaaacatatatgtattgaaaatgacag |
48731332 |
T |
|
| Q |
339 |
tagagttcccaatactttttgtctgtaaacaaacaat |
375 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48731333 |
tagagttcctaatactttttgtctgtaaacaaacaat |
48731369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 3106497 - 3106683
Alignment:
| Q |
13 |
aatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaa |
112 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3106497 |
aatatacacaactagagttttagagtgatttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatggcaa |
3106596 |
T |
|
| Q |
113 |
attaatagtcacttacccctttttcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaaataag |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3106597 |
attaatagtcacttacccctttctcatccatcaaaagatttacagttttgaggtctctatgtataatgttgttttgatgcaaataag |
3106683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 239 - 375
Target Start/End: Original strand, 3106681 - 3106818
Alignment:
| Q |
239 |
aaggaagagtaagcacgaccttctgtatatgcagaaagtcgtacatatttccaccaggcatatattctga-gaaaaaacatatatgtattgaaaatgaca |
337 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
3106681 |
aaggaagagtaagcacaaccttttgtatatgcagaaagtcatacttatttccaccaggcatatattcttaggaaaaaacatacatgtattgaaaatgaca |
3106780 |
T |
|
| Q |
338 |
atagagttcccaatactttttgtctgtaaacaaacaat |
375 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| |
|
|
| T |
3106781 |
gtagagttcctaatacttttttattgtaaacaaacaat |
3106818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 6869638 - 6869452
Alignment:
| Q |
13 |
aatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaa |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |
|
|
| T |
6869638 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacttgtaaaatcaaaagaaatgataa |
6869539 |
T |
|
| Q |
113 |
attaatagtcacttacccctttttcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaaataag |
199 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6869538 |
attaatagtcacttacccctttctaatccatcaaaagattaacagttttgaagtctctatgtataatgttgttttgatgcaaataag |
6869452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 239 - 375
Target Start/End: Complemental strand, 6869454 - 6869323
Alignment:
| Q |
239 |
aaggaagagtaagcacgaccttctgtatatgcagaaagtcgtacatatttccaccaggcatatattctgagaaaaaacatatatgtattgaaaatgacaa |
338 |
Q |
| |
|
|||||||||||||||| || || || |||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
6869454 |
aaggaagagtaagcacaacgttttgaatatgcagaaagtcatacatatttccaccacgcatatattctcagaaaaaac--atatgtatttaaaatgac-- |
6869359 |
T |
|
| Q |
339 |
tagagttcccaatactttttgtctgtaaacaaacaat |
375 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| |
|
|
| T |
6869358 |
-agagttcctaataatttttgtctgtaaacaaacaat |
6869323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 41222247 - 41222061
Alignment:
| Q |
13 |
aatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaa |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41222247 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatgacaa |
41222148 |
T |
|
| Q |
113 |
attaatagtcacttacccctttttcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaaataag |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | || || |||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
41222147 |
attaatagtcacttacccctttctcatccatcaaaatactaacatttttgaggtctctatgtataatgatgttttgatgcaaataag |
41222061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 41222005 - 41221958
Alignment:
| Q |
328 |
gaaaatgacaatagagttcccaatactttttgtctgtaaacaaacaat |
375 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
41222005 |
gaaaatgacagtagagttcttaatattttttgtctgtaaacaaacaat |
41221958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 53661309 - 53661407
Alignment:
| Q |
217 |
tcaattgctactttgagcaatgaaggaagagtaagcacgaccttctgtatatgcagaaagtcgtacatatttccaccaggcatatattctgagaaaaaa |
315 |
Q |
| |
|
||||| |||||||| ||||| || ||||||| ||| || |||||| |||| |||| |||||||||| ||||||||| || ||||||||||| |||| |
|
|
| T |
53661309 |
tcaatggctacttttagcaaagatggaagagcaaggacagttttctgtttatgaagaaggtcgtacatacttccaccagacaaatattctgagataaaa |
53661407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 41222063 - 41222006
Alignment:
| Q |
239 |
aaggaagagtaagcacgaccttctgtatatgcagaaagtcgtacatatttccaccagg |
296 |
Q |
| |
|
||||||||||||| || ||||| |||| |||| ||||||| || |||||||||||||| |
|
|
| T |
41222063 |
aaggaagagtaagtacaaccttttgtacatgctgaaagtcatagatatttccaccagg |
41222006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University