View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13158_low_1 (Length: 638)
Name: NF13158_low_1
Description: NF13158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13158_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 41 - 620
Target Start/End: Original strand, 10011437 - 10012005
Alignment:
| Q |
41 |
ggtgttcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaaggttgatgaaagattctggcggagaacatgcagctatggagatggcatt |
140 |
Q |
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| T |
10011437 |
ggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaa----------agattctggcggagaacatgcagctatggagatggcatt |
10011526 |
T |
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| Q |
141 |
gaagagttggatggatactgtgttgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaatnnnnnnngttatga |
240 |
Q |
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| T |
10011527 |
gaagagttggatggatactgtgctgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaagttatga |
10011626 |
T |
|
| Q |
241 |
tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggtacattattaattgtggtaagaaagca |
340 |
Q |
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| T |
10011627 |
tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggta-attattaattgtggtaagaaagca |
10011725 |
T |
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| Q |
341 |
acgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgagtgtttactgactcatggttagtaacatccatatataggcat |
440 |
Q |
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| T |
10011726 |
acgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgattgtttactgactcatggttagtaacatccatatataggcat |
10011825 |
T |
|
| Q |
441 |
agagtgcaggcaaatagtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagttttgtcattccaagacacttcattc |
540 |
Q |
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| T |
10011826 |
agagtgcaggcaaatagtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagttttgtcattccaagatacttcattc |
10011925 |
T |
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| Q |
541 |
aattaattaaggagggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattag |
620 |
Q |
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| T |
10011926 |
aattaattaaggagggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattag |
10012005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 10011368 - 10011409
Alignment:
| Q |
8 |
caccacagagcttggatttggacaacaaagaggggtgttcat |
49 |
Q |
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| T |
10011368 |
caccacagagcttggatttggacaacaaagaggggtgttcat |
10011409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 509
Target Start/End: Original strand, 39076149 - 39076201
Alignment:
| Q |
457 |
gtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggct |
509 |
Q |
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| T |
39076149 |
gtgtacctaggtgcatggaaaacaaaccaacataaattctgagtgagaaggct |
39076201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 11215127 - 11215021
Alignment:
| Q |
388 |
ggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagagtgcaggcaaata-gtgtatctaggtgcatggaaaatataccga |
486 |
Q |
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|||||| |||||| ||||||||| ||||||| |||||||| |||||||||||| ||| ||||| | ||||| ||||||||||||||||||| || |
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| T |
11215127 |
ggatgttttgagtaattactgactgatggttattaacatccttatataggcataattagcatgcaaaaacgtgtacataggtgcatggaaaatataacgt |
11215028 |
T |
|
| Q |
487 |
aataaat |
493 |
Q |
| |
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||||||| |
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| T |
11215027 |
aataaat |
11215021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 11225638 - 11225532
Alignment:
| Q |
388 |
ggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagagtgcaggcaaata-gtgtatctaggtgcatggaaaatataccga |
486 |
Q |
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|||||| |||||| ||||||||| ||||||| |||||||| |||||||||||| ||| ||||| | ||||| ||||||||||||||||||| || |
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| T |
11225638 |
ggatgttttgagtaattactgactgatggttattaacatccttatataggcataattagcatgcaaaaacgtgtacataggtgcatggaaaatataacgt |
11225539 |
T |
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| Q |
487 |
aataaat |
493 |
Q |
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||||||| |
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| T |
11225538 |
aataaat |
11225532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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