View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13158_low_3 (Length: 477)
Name: NF13158_low_3
Description: NF13158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13158_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 14433610 - 14434064
Alignment:
| Q |
8 |
ataagaagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttgagaagagccatttcca |
107 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14433610 |
ataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagcgaacaaagcagcttggaagagttgagaagagccatttcca |
14433709 |
T |
|
| Q |
108 |
acaactatgtatttatctttggtcacagcatttccaactaaatgatgaagtctctctatctcatccctcaattctggcaacatgaaccaacacatgttac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14433710 |
acaactatgtatttatctttggtcacagcatttccaactaaatgatgaagtctctctatctcatccctcaattctggcaacatgaaccaacacatgttac |
14433809 |
T |
|
| Q |
208 |
tcgagtcactgtagtaactcatcaattcccatcctttaatcacaaccgtacatttatcactcatctgcttccagtatgattcaaatgccaatggatcacc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14433810 |
tcgagtcactgtagtaactcatcaattcccatcctttaatcacaaccgtacattcatcactcatctgcttccagtatgattcaaatgccaatggatcacc |
14433909 |
T |
|
| Q |
308 |
cctgttaattgcaaaagcatatataaatcatcatatatcatataaaatctaaaaaccagactaagtgaattcaaatatataaaataacgaagatacnnnn |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14433910 |
cctgttaattgcaaaagcatatataaatcatcatatatcatataaaatctaaaaaccagactaagtgaattcaaatatataaaataacgaagatacaaaa |
14434009 |
T |
|
| Q |
408 |
nnntagatgattacttctgagcatcgatgatggaattgggtgagagagtggagag |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14434010 |
aaatagatgattacttctgagcatcgatgatggaattgggtgagagagtggagag |
14434064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University