View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13159_high_1 (Length: 440)
Name: NF13159_high_1
Description: NF13159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13159_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 6500835 - 6501094
Alignment:
| Q |
1 |
acagaacgccaaatgtgagttaaaagagcttgtaaggaagatattttgttcataccaatctctaagttggctttatatttcaatttaaagattttttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
6500835 |
acagaacgccaaatgtgagttaaaagagcttgtaaggatgatattttgttcataccaaactctaacttggctttatatttcaatttcaagattttttcct |
6500934 |
T |
|
| Q |
101 |
ttgtaaaatagaataacctcgttgaagggttgagttcctcatcatcagagtgattcaacatctgattttgcgatgataaaaagtctaacccattagagtg |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6500935 |
ttgtaaaatggaataacctcgttgaagggttgagttcctcatcatcacagtgattcaacatatgattttgcgatgataaaaagtctaacccattagagtg |
6501034 |
T |
|
| Q |
201 |
attattttgaggctccattgtggaaggaaatcgtatgggacgttgaatatcatttggaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
6501035 |
attattttgaggctccattgtggaaggaaatcgtatggaacgctgaatatcatttggaaa |
6501094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 8102830 - 8102944
Alignment:
| Q |
22 |
aaaagagcttgtaaggaagatattttgttcataccaatctctaagttggctttatatttcaatttaaagattttttcctttgtaaaatagaataacctcg |
121 |
Q |
| |
|
||||| ||||| | |||||||||||||||| |||| | |||||||||||||| ||||||||| | ||||||| |||||||| |||| |||||||| |
|
|
| T |
8102830 |
aaaagtgcttgaagggaagatattttgttcgtacccgtttctaagttggctttcaatttcaattgagagattttctcctttgtgaaatgaaataacctaa |
8102929 |
T |
|
| Q |
122 |
ttgaagggttgagtt |
136 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
8102930 |
ctgatgggttgagtt |
8102944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 40147097 - 40147017
Alignment:
| Q |
40 |
gatattttgttcataccaatctctaagttggctttatatttcaatttaaagattttttcctttgtaaaatagaataacctc |
120 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||| |||||| || | |||||| |||||||| |||| |||||||||| |
|
|
| T |
40147097 |
gatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatggaataacctc |
40147017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 7606756 - 7606819
Alignment:
| Q |
197 |
agtgattattttgaggctccattgtggaaggaaatcgtatgggacgttgaatatcatttggaaa |
260 |
Q |
| |
|
||||||||||||| ||||| | ||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
7606756 |
agtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaa |
7606819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 7655747 - 7655673
Alignment:
| Q |
186 |
taacccattagagtgattattttgaggctccattgtggaaggaaatcgtatgggacgttgaatatcatttggaaa |
260 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||| || || ||||||||||||| || |||||||| |||||||||| |
|
|
| T |
7655747 |
taacccatcagagtgattcttttgtggctctatagttaaaggaaatcgtataggtcgttgaattccatttggaaa |
7655673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 39098046 - 39098088
Alignment:
| Q |
8 |
gccaaatgtgagttaaaagagcttgtaaggaagatattttgtt |
50 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
39098046 |
gccaaaggtgagttaaaagtgcttgtaaagaagatattttgtt |
39098088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 7629168 - 7629204
Alignment:
| Q |
224 |
aaggaaatcgtatgggacgttgaatatcatttggaaa |
260 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
7629168 |
aaggaaatcgtatgggaagttgaataccatttggaaa |
7629204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 15190756 - 15190720
Alignment:
| Q |
224 |
aaggaaatcgtatgggacgttgaatatcatttggaaa |
260 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15190756 |
aaggaaatcgtatgggacgttgaattccatttggaaa |
15190720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University