View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13159_high_2 (Length: 409)

Name: NF13159_high_2
Description: NF13159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13159_high_2
NF13159_high_2
[»] chr4 (1 HSPs)
chr4 (18-400)||(14943645-14944028)
[»] chr5 (3 HSPs)
chr5 (18-329)||(20062199-20062510)
chr5 (33-323)||(21379847-21380131)
chr5 (155-321)||(22804292-22804458)
[»] chr1 (7 HSPs)
chr1 (44-335)||(21307177-21307467)
chr1 (65-321)||(22615968-22616224)
chr1 (331-363)||(21307484-21307516)
chr1 (331-363)||(18217656-18217688)
chr1 (331-363)||(20863502-20863534)
chr1 (331-363)||(21312165-21312197)
chr1 (331-363)||(22616255-22616287)
[»] scaffold2063 (1 HSPs)
scaffold2063 (35-269)||(781-1015)
[»] chr3 (2 HSPs)
chr3 (18-152)||(4771069-4771203)
chr3 (168-335)||(4770689-4770856)
[»] chr7 (1 HSPs)
chr7 (105-319)||(16053661-16053875)
[»] scaffold0054 (2 HSPs)
scaffold0054 (155-214)||(79582-79641)
scaffold0054 (331-363)||(79779-79811)
[»] chr6 (1 HSPs)
chr6 (35-95)||(14635049-14635109)
[»] chr2 (2 HSPs)
chr2 (167-227)||(24987369-24987429)
chr2 (331-363)||(24987554-24987586)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 14944028 - 14943645
Alignment:
18 ttgaaaagctattttttgaagcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatc 117  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
14944028 ttgaaaagctatttgtcgaagcaaaagatgatgttgctcaatgtcatatggtagaagtttctcgaagccccaaagatgctgacgaaatcatttcagaatc 14943929  T
118 tctatttgatgagaaggaaaaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgtta 217  Q
    ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
14943928 tctgtttcatgagaaggcaaaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattatgaggtaatgttg 14943829  T
218 tgccccagattttgttcggtattcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcata 317  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||    
14943828 tgccccagatgtagttcggtattcgacaaagaggctaccaaaagccttaaaaaatttattccagaatcaaagaaaagaggaaaatggtctgctgatcata 14943729  T
318 gaccaacgttctatttcatcaataactcttcgaccactaattatgt-nnnnnnntggtcaaggaaaaacttttgtgccctatgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| |||||||||    
14943728 gaccaacgttctatttcatcaataactcttcgaccactaattatgtaaaaaaaatggtcaaggaaaaacttttgggccctatgc 14943645  T

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Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 20062199 - 20062510
Alignment:
18 ttgaaaagctattttttgaagcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatc 117  Q
    ||||||| |||| | | ||||||||||||||||||| | ||| ||| ||||||||||||||| |||  ||||| | || ||||||||||| | | ||| |    
20062199 ttgaaaaactatatgtcgaagcaaaagatgatgttgttgaatttcagatggtagaagtttctggaaatcccaagggtgttgacgaaatcactcctgaa-c 20062297  T
118 tctatttga-tgagaaggaaaaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgtt 216  Q
    || | || | |||||||||||||| ||||||||||| | ||||| |||||||||| |||||||| |||||||| ||||||||||| ||| ||||||||||    
20062298 tccagttcaatgagaaggaaaaagaagcttatcccacgactgaacaggagttgattgatttccttaatcgttgtagattgaagaactctaaggtaatgtt 20062397  T
217 atgccccagattttgttcggtattcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcat 316  Q
     |||||||||| | |||| ||||||||||||||| |||| ||||||||||||  | || |||||||||| ||||| ||||||||||||||| ||||||||    
20062398 gtgccccagatgtagttcagtattcgacaaagaggctactaaaagccttgaacgtattgttccagaatctaagaagagaggaaaatggtctactgatcat 20062497  T
317 agaccaacgttct 329  Q
    ||||||| |||||    
20062498 agaccaaagttct 20062510  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 323
Target Start/End: Complemental strand, 21380131 - 21379847
Alignment:
33 ttgaagcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaa 132  Q
    |||||||||||| |||||||||| ||||||| ||||| || |||||| ||  |||||||  |||||| ||| |||||| ||| |||| ||||||||||||    
21380131 ttgaagcaaaagttgatgttgctgaatgtcagatggtggaggtttctggagaccccaaaagtgctgatgaagtcatttgagagtctcaatttgatgagaa 21380032  T
133 ggaaaaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgt 232  Q
    ||        ||||| |  |||||||||||| |  |||| ||||||||||||||||| || |||||||| ||| |||| ||| |||||| |||||   ||    
21380031 ggtg------gcttaccttatggctgaagagaaactgattgatttcctcaatcgttgtaggttgaagaactctaaggttatggtatgccacagatgcagt 21379938  T
233 tcggtattcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaa 323  Q
    |  |  |||||||||||| |||| ||||| |||||   |||||||||| |||||||||||||||||||||||| || ||||||||||||||    
21379937 tttgcgttcgacaaagaggctactaaaagtcttgagggttttattccaaaatcaaagaaaagaggaaaatggtttgttgatcatagaccaa 21379847  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 22804458 - 22804292
Alignment:
155 gctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtattcgacaaagagtcta 254  Q
    |||||||| || ||||| || ||||||||||| || ||  ||||||||| |||||||||||| ||||   ||| | || | ||||| ||||||||| | |    
22804458 gctgaagaagaattgattgacttcctcaatcgatgtaggctgaagaattatgaggtaatgttttgccttcgatgtagtgctgtatttgacaaagaggcaa 22804359  T
255 ccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagacc 321  Q
    | ||| || |||||| || ||| ||| |  | ||||||||||| ||||||| || ||||||||||||    
22804358 ctaaaggcgttgaaagttctatcccaaaccctaagaaaagagggaaatggtatggtgatcatagacc 22804292  T

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Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 44 - 335
Target Start/End: Original strand, 21307177 - 21307467
Alignment:
44 gatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaaggaaaaagcag 143  Q
    ||||||||||   ||| ||| ||||||||||||||| |||| |||||||||||||| |||||| ||||||||  ||  || |||||||||| |||| ||     
21307177 gatgatgttggctaatatcagatggtagaagtttctggaagtcccaaagatgctgatgaaatcttttcagaacttcagttcgatgagaaggcaaaaacaa 21307276  T
144 cttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtattcga 243  Q
    |||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| || || ||||   ||||||| |||||    
21307277 cttatcccatggttgaagaggagctgattgatttcctcaattgttgcagattgaagaattctgaggtaatgttgtg-cctagatgaagttcggtgttcga 21307375  T
244 caaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaacgttctatttca 335  Q
    ||| ||| ||||||||| |||||| | |   ||||||||||| ||||| ||||||||||||| | ||||||||| ||||| ||||| |||||    
21307376 caatgaggctaccaaaatccttgacaatgacattccagaatccaagaagagaggaaaatggtatactgatcataaaccaaagttctctttca 21307467  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 321
Target Start/End: Original strand, 22615968 - 22616224
Alignment:
65 atggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaaggaaaaagcagcttatcccatggctgaagagg 164  Q
    |||||||||| |||| ||  |||||||  |||  ||||| |||| ||| || ||| |||| |||||||||| ||||  |   ||||||||||||||||||    
22615968 atggtagaagcttctggagaccccaaaagtgcctacgaagtcatctcataaactcaatttcatgagaaggagaaagtggtcgatcccatggctgaagagg 22616067  T
165 agttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtattcgacaaagagtctaccaaaagcct 264  Q
    |  |  ||||||| |||||||| ||||| || || ||||| ||| | || || |||||||  | | | |  || |||||||||||| ||||||||||| |    
22616068 aactagtcgattttctcaatcggtgcaggttaaaaaattcggagatcattttgtgccccaagtatagcttcgtgttcgacaaagaggctaccaaaagctt 22616167  T
265 tgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagacc 321  Q
    |||   ||||||| || |||| ||||||||||||||||||| |||||||||||||||    
22616168 tgagggttttatttcaaaatccaagaaaagaggaaaatggtatgctgatcatagacc 22616224  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 21307484 - 21307516
Alignment:
331 tttcatcaataactcttcgaccactaattatgt 363  Q
    |||||||||||||||||||||||||||||||||    
21307484 tttcatcaataactcttcgaccactaattatgt 21307516  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 18217656 - 18217688
Alignment:
331 tttcatcaataactcttcgaccactaattatgt 363  Q
    |||||||||||||||||||||||| ||||||||    
18217656 tttcatcaataactcttcgaccaccaattatgt 18217688  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 20863534 - 20863502
Alignment:
331 tttcatcaataactcttcgaccactaattatgt 363  Q
    ||||||||||||||||||||| |||||||||||    
20863534 tttcatcaataactcttcgacaactaattatgt 20863502  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 21312165 - 21312197
Alignment:
331 tttcatcaataactcttcgaccactaattatgt 363  Q
    |||||||||||||||||||||||| ||||||||    
21312165 tttcatcaataactcttcgaccaccaattatgt 21312197  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 22616255 - 22616287
Alignment:
331 tttcatcaataactcttcgaccactaattatgt 363  Q
    |||||||||||||| ||||||||||||||||||    
22616255 tttcatcaataactattcgaccactaattatgt 22616287  T

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Target: scaffold2063 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold2063
Description:

Target: scaffold2063; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 35 - 269
Target Start/End: Original strand, 781 - 1015
Alignment:
35 gaagcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaagg 134  Q
    ||||| ||||||||| ||| | ||||||| ||||| ||||||||| |||| |||||||||||| || |||||| |||||||  ||  || ||||||||||    
781 gaagcgaaagatgatattgttgaatgtcagatggttgaagtttctggaagtcccaaagatgctaacaaaatcacttcagaacttcatttcgatgagaagg 880  T
135 aaaaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttc 234  Q
    |||||||| |||||||||||| |||||||||| |||| |||||||||||| |||| | ||| ||||| |||||||||||||| |||   |||| | ||||    
881 aaaaagcaacttatcccatggatgaagaggagctgattgatttcctcaattgttgtaaattaaagaactctgaggtaatgttgtgctttagatgtagttc 980  T
235 ggtattcgacaaagagtctaccaaaagccttgaaa 269  Q
       ||||||||||||| ||| ||||||||||||||    
981 taaattcgacaaagaggctaacaaaagccttgaaa 1015  T

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Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 4771203 - 4771069
Alignment:
18 ttgaaaagctattttttgaagcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatc 117  Q
    |||||||||||||| | |||| |||||||||||||||| ||||||| ||||||||||||||| ||| | |||||||||||||||||||||||| |||| |    
4771203 ttgaaaagctatttgtcgaagaaaaagatgatgttgctgaatgtcaaatggtagaagtttctggaaactccaaagatgctgacgaaatcattttagaacc 4771104  T
118 tctatttgatgagaaggaaaaagcagcttatccca 152  Q
    || |||| ||||||||| ||||||| |||||||||    
4771103 tcgatttaatgagaaggcaaaagcaacttatccca 4771069  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 168 - 335
Target Start/End: Complemental strand, 4770856 - 4770689
Alignment:
168 tgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtattcgacaaagagtctaccaaaagccttga 267  Q
    |||| |||||| ||||| |||||| ||||||||||||| |||||||||| ||||| |||| | ||||| |||| ||||||||| |||| |||||||||||    
4770856 tgattgatttcgtcaattgttgcatattgaagaattcttaggtaatgttgtgccctagatgtagttcgatatttgacaaagaggctacaaaaagccttga 4770757  T
268 aatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaacgttctatttca 335  Q
    || | ||||||| ||||| |||||||||| ||| |||| ||||| ||||| ||||||||||| |||||    
4770756 aaatcttattcccgaatccaagaaaagagaaaattggtttgctggtcatataccaacgttctctttca 4770689  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 319
Target Start/End: Complemental strand, 16053875 - 16053661
Alignment:
105 tcatttcagaatctctatttgatgagaaggaaaaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattc 204  Q
    ||||||||||||||| ||||| |||||||   ||||  |||||||  |||||||||||||| ||||| |||||||||||  ||||||| || ||||||||    
16053875 tcatttcagaatctcaatttgctgagaagatgaaagtggcttatcatatggctgaagaggaattgattgatttcctcaactgttgcaggttaaagaattc 16053776  T
205 tgaggtaatgttatgccccagattttgttcggtattcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatgg 304  Q
    |||||| ||||||||||||||||   |||  || |||| ||||||| |||| ||   |||| |   |||||||||| |||||||||| ||||||||||||    
16053775 tgaggttatgttatgccccagatgcagttatgtgttcggcaaagaggctactaaggtccttaagggttttattccaaaatcaaagaagagaggaaaatgg 16053676  T
305 tctgctgatcataga 319  Q
    | |||||||||||||    
16053675 tttgctgatcataga 16053661  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 79582 - 79641
Alignment:
155 gctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatg 214  Q
    |||||||| |||||||| |||||||||||||| ||||   | ||||||||||||||||||    
79582 gctgaagaagagttgattgatttcctcaatcgatgcaagctaaagaattctgaggtaatg 79641  T

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Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 79779 - 79811
Alignment:
331 tttcatcaataactcttcgaccactaattatgt 363  Q
    |||||||||||||||||||||||| ||||||||    
79779 tttcatcaataactcttcgaccacaaattatgt 79811  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 14635109 - 14635049
Alignment:
35 gaagcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatg 95  Q
    |||||||||  ||| |||||| ||| ||| ||||||||||| |||||||| ||||||||||    
14635109 gaagcaaaaactgacgttgctgaatctcagatggtagaagtatctagaagtcccaaagatg 14635049  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 24987369 - 24987429
Alignment:
167 ttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagat 227  Q
    ||||| |||||||||||||| |||||  ||||||||||| |||||||| | ||||| ||||    
24987369 ttgattgatttcctcaatcgatgcaggctgaagaattctaaggtaatgctctgccctagat 24987429  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 24987554 - 24987586
Alignment:
331 tttcatcaataactcttcgaccactaattatgt 363  Q
    |||||||||||||||||||||||| ||||||||    
24987554 tttcatcaataactcttcgaccaccaattatgt 24987586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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