View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13159_high_3 (Length: 378)

Name: NF13159_high_3
Description: NF13159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13159_high_3
NF13159_high_3
[»] chr6 (2 HSPs)
chr6 (34-203)||(6500287-6500456)
chr6 (234-378)||(6500474-6500618)
[»] chr4 (10 HSPs)
chr4 (82-193)||(7636900-7637011)
chr4 (82-199)||(7628524-7628641)
chr4 (82-194)||(7606072-7606184)
chr4 (82-190)||(7615086-7615194)
chr4 (98-190)||(7656312-7656404)
chr4 (238-300)||(7615229-7615291)
chr4 (256-299)||(7637061-7637104)
chr4 (238-288)||(7656227-7656277)
chr4 (250-299)||(7606227-7606276)
chr4 (253-289)||(39082357-39082393)
[»] chr3 (4 HSPs)
chr3 (234-317)||(40147426-40147509)
chr3 (90-194)||(40147536-40147640)
chr3 (101-194)||(8102310-8102403)
chr3 (234-305)||(8102430-8102501)
[»] chr7 (5 HSPs)
chr7 (82-193)||(8936264-8936375)
chr7 (82-193)||(8913761-8913872)
chr7 (97-194)||(8941907-8942004)
chr7 (256-300)||(8936170-8936214)
chr7 (250-299)||(8941816-8941865)
[»] scaffold0190 (1 HSPs)
scaffold0190 (245-290)||(4448-4493)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 6500287 - 6500456
Alignment:
Q  34 aaactaaaacggcatcattttgtaaaccttaaatctacatacattattattagttggacacagcatccatgaaattagggtcattactcattgcttccaa 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6500287 aaactaaaacggcatcattttgtaaaccttaaatctacatacattattattagttggacacagcatccatgaaattagggtcataactcattgcttccaa 6500386  T
Q  134 agtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaaatacactaaccata 203  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  6500387 agtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaaatacactaaccata 6500456  T

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Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 234 - 378
Target Start/End: Original strand, 6500474 - 6500618
Alignment:
Q  234 actgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactgttactggcaaatgtattactattgattgtgcta 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  6500474 actgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactgttaccggcaaatgtattactattgatcgtgcta 6500573  T
Q  334 gagattctaatgctcggatttctcaaccaagattcgtagttattc 378  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  6500574 gagattctaatgctcggatttctcaaccaagattcgtatttattc 6500618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 7636900 - 7637011
Alignment:
Q  82 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 181  Q
    |||||||||||||| ||||||||||||| |||||||| | |||| | |||||| |||    ||||| |||||||||||||||||||||||| |||||| |    
T  7636900 attagttggacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctat 7636999  T
Q  182 tccagcaaatac 193  Q
    ||| ||||||||    
T  7637000 tccggcaaatac 7637011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 7628524 - 7628641
Alignment:
Q  82 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 181  Q
    |||||||||||||| ||||||  || | ||||||||| | |||||| |||||| ||| |||||||| ||| | ||||||||| |||||||| |||||| |    
T  7628524 attagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctat 7628623  T
Q  182 tccagcaaatacactaac 199  Q
    ||||||||||||| ||||    
T  7628624 tccagcaaatacattaac 7628641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 7606072 - 7606184
Alignment:
Q  82 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 181  Q
    ||||||||| |||  ||||||||||||  |||||| | | |||||| ||||||  ||||||||||| ||| ||||||||||| |||||||| |||||| |    
T  7606072 attagttggtcacgacatccatgaaatgtgggtcacttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctat 7606171  T
Q  182 tccagcaaataca 194  Q
    |||||||||||||    
T  7606172 tccagcaaataca 7606184  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 7615086 - 7615194
Alignment:
Q  82 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 181  Q
    ||||||||||| || |||||||||| | ||||||||| | |||||| |||||| |||  |  | || |||||||||||| ||||||||||| |||||| |    
T  7615086 attagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 7615185  T
Q  182 tccagcaaa 190  Q
    |||||||||    
T  7615186 tccagcaaa 7615194  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 7656404 - 7656312
Alignment:
Q  98 atccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaaa 190  Q
    ||||||||| | ||| ||||| | |||||| |||||| |||||||||||| ||| ||||||||||| || ||| | |||||| ||||||||||    
T  7656404 atccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaa 7656312  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 7615229 - 7615291
Alignment:
Q  238 cgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactg 300  Q
    |||| |||||| || || ||||| ||||||||||||||||||| |||||||||||| ||||||    
T  7615229 cgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacggagaactg 7615291  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 7637061 - 7637104
Alignment:
Q  256 ccccatccaaaatcattaccataaatatcaaaccacggggaact 299  Q
    ||||||||||||||||||||||||| ||||||||| || |||||    
T  7637061 ccccatccaaaatcattaccataaacatcaaaccatggagaact 7637104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 7656277 - 7656227
Alignment:
Q  238 cgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaac 288  Q
    |||| |||||| || || ||||||||||||||||||||||||| |||||||    
T  7656277 cgaactgccacaggctttccccatccaaaatcattaccataaacatcaaac 7656227  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 7606227 - 7606276
Alignment:
Q  250 ggtttcccccatccaaaatcattaccataaatatcaaaccacggggaact 299  Q
    ||||| |||||||| |||||||||||||||| ||||||||| || |||||    
T  7606227 ggttttccccatccgaaatcattaccataaacatcaaaccatggagaact 7606276  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 39082357 - 39082393
Alignment:
Q  253 ttcccccatccaaaatcattaccataaatatcaaacc 289  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  39082357 ttcccccaaccaaaatcattaccataaacatcaaacc 39082393  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 40147509 - 40147426
Alignment:
Q  234 actgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactgttactggcaaatgtatt 317  Q
    |||||||| |||||| ||||  ||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||    
T  40147509 actgcgaactgccacaggttctccccatccaaaatcattaccataaacatcaaaccacggggaattgctactggctaatgtatt 40147426  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 40147640 - 40147536
Alignment:
Q  90 gacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaa 189  Q
    |||||| |||||||||| | | ||||||| | |||||| |||||| |||||| ||||| ||| ||||||| ||| || ||||| ||||||||||||||||    
T  40147640 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 40147541  T
Q  190 ataca 194  Q
    |||||    
T  40147540 ataca 40147536  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 8102310 - 8102403
Alignment:
Q  101 catgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaaataca 194  Q
    |||||||  ||| ||||| | |||||| |||||| |||||| ||||| ||| ||||||||||| |||||||| |||||| ||||||||||||||    
T  8102310 catgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaataca 8102403  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 8102430 - 8102501
Alignment:
Q  234 actgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactgttact 305  Q
    |||||||| |||||| ||||| ||||||||||||| ||| ||||||| |||||||||| |||||||| ||||    
T  8102430 actgcgaactgccactggttttccccatccaaaattattgccataaacatcaaaccactgggaactgctact 8102501  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 8936375 - 8936264
Alignment:
Q  82 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 181  Q
    ||||||||||| || |||||||||| | ||||||||| | |||||| |||||| |||  || |||| ||||||||||||||| |||||||| |||||| |    
T  8936375 attagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctat 8936276  T
Q  182 tccagcaaatac 193  Q
    ||| ||||||||    
T  8936275 tccggcaaatac 8936264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 8913872 - 8913761
Alignment:
Q  82 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 181  Q
    |||||||||||||| ||||||||||||| |||||||| | |||| | |||||| |||    ||||| ||||||||||||||||||| |||| |||||| |    
T  8913872 attagttggacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctat 8913773  T
Q  182 tccagcaaatac 193  Q
    |||  |||||||    
T  8913772 tccgacaaatac 8913761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 8942004 - 8941907
Alignment:
Q  97 catccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaaataca 194  Q
    |||||||||||   |||||| | | |||||| ||||||  || |||||||| ||| ||||||||||| |||||||| |||||| ||||||||||||||    
T  8942004 catccatgaaacgtgggtcacttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaataca 8941907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 8936214 - 8936170
Alignment:
Q  256 ccccatccaaaatcattaccataaatatcaaaccacggggaactg 300  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  8936214 ccccatccaaaatcattaccataaacatcaaaccacggagaactg 8936170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 8941865 - 8941816
Alignment:
Q  250 ggtttcccccatccaaaatcattaccataaatatcaaaccacggggaact 299  Q
    ||||| |||||||| |||||||||||||||| ||||||||| || |||||    
T  8941865 ggttttccccatccgaaatcattaccataaacatcaaaccatggagaact 8941816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 4448 - 4493
Alignment:
Q  245 ccacgggtttcccccatccaaaatcattaccataaatatcaaacca 290  Q
    |||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  4448 ccacaggttttccccaaccaaaatcattaccataaacatcaaacca 4493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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