View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1315_low_1 (Length: 575)
Name: NF1315_low_1
Description: NF1315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1315_low_1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 438 - 575
Target Start/End: Original strand, 4654879 - 4655016
Alignment:
| Q |
438 |
actcaataatatctttagtttgggaccaaataatcgtgaaatgtgaatatattaggatggagtgttagctggtaataagacaatgaggaaaaagttaatg |
537 |
Q |
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| T |
4654879 |
actcaataatatctttagtttggggccaaataatcgtgaaatgtgaatatattaggatggagtgttagctggtaataagacaatgaggaaaaagttaatg |
4654978 |
T |
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| Q |
538 |
tacgatttatttattatattgtccctgaaaactttaat |
575 |
Q |
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| T |
4654979 |
tacgatttatttattatattgtccctgaaaactttaat |
4655016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 4654573 - 4654697
Alignment:
| Q |
86 |
tcacaccaagtctcaaactatcacatgatatatagggactaatgcagaggccatgacatattgctaacattagtctatttttaatgacaaatggtaatag |
185 |
Q |
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| T |
4654573 |
tcacaccaagtctcaaactatcacatgatatatacggactaatgtagaggccatgacatattgctaacattagtctctttttaatgacaaatggtaatag |
4654672 |
T |
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| Q |
186 |
ttaatttgttaaattaatatttatt |
210 |
Q |
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| T |
4654673 |
ttaatttgttaaattaatatttatt |
4654697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 4654696 - 4654835
Alignment:
| Q |
260 |
ttaacctaaattatttgaggtatc---tacccagctcgtgtagcaactaacaacaaataaaaggagtaatatcttcattgatatgaatgattctagctac |
356 |
Q |
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| T |
4654696 |
ttaacctaaactatttgaggtaccccctacccagctcgtgtagcaactaacaacaaataaaacgagcaatatattcattgatatgaatgattctagctac |
4654795 |
T |
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| Q |
357 |
ctgtcaccttttcaacttaattgtttattgttgtggaggg |
396 |
Q |
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| T |
4654796 |
ctgtcaccttttcaacttaattgtttattgttgtggaggg |
4654835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 4654512 - 4654552
Alignment:
| Q |
15 |
aacctgtgagtaatacttataatattatggactgattaacc |
55 |
Q |
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| T |
4654512 |
aacctgtgagtaatacttataatattatggactgattaacc |
4654552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 35940528 - 35940483
Alignment:
| Q |
163 |
tttttaatgacaaatggtaatagttaatttgttaaattaatattta |
208 |
Q |
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| T |
35940528 |
tttttaatgacaaatgttaatagttaatttattaaattaatattta |
35940483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 29086365 - 29086321
Alignment:
| Q |
164 |
ttttaatgacaaatggtaatagttaatttgttaaattaatattta |
208 |
Q |
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| T |
29086365 |
ttttaataacaaatgttagtagttaatttgttagattaatattta |
29086321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 44167983 - 44167939
Alignment:
| Q |
163 |
tttttaatgacaaatggtaatagttaatttgttaaattaatattt |
207 |
Q |
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| T |
44167983 |
tttttaatgacaaatgttcgtagttaatttgtaaaattaatattt |
44167939 |
T |
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