View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1315_low_2 (Length: 539)
Name: NF1315_low_2
Description: NF1315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1315_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 96 - 347
Target Start/End: Complemental strand, 52162665 - 52162415
Alignment:
| Q |
96 |
atggcttggtggcaccgctacaaatctgcaagcttcgtattcacattattcatcattatttccatgataatatggttagcttgctttggggttcgtagga |
195 |
Q |
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| T |
52162665 |
atggcttggtggcaccgctacaaatctgcaagcttcgtattcacattattcatcattattttcatgataatatggttagcttgctttggggttcgtagga |
52162566 |
T |
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| Q |
196 |
aagaacataattctggtannnnnnngcgataatcaattgtttcatatacatttgttagataaattgctgaaattaggttctttgttttaaatccttgtta |
295 |
Q |
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| T |
52162565 |
aagaacataattctggtatttttt-gcgataatgaattgtttcatatacatttgttagataaattgctgaaattaggttctttgttttaaatccttgtta |
52162467 |
T |
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| Q |
296 |
ttccattgtttgaaatgtttacttttgtttatgaatatgaactattacattg |
347 |
Q |
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| T |
52162466 |
ttccattgtttgaaatgtttacttttgtttatgaatatgaactattacattg |
52162415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 408 - 511
Target Start/End: Complemental strand, 52162378 - 52162276
Alignment:
| Q |
408 |
tcctgtgcttgaaagtcagtcgtttccgtatcatttttcttgaatgattttaattttacttcttnnnnnnncgttttaaaattagcatatattaaaaaga |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
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| T |
52162378 |
tcctgtgcttgaaagtcagtcgtttccgtatcatttttcttgaatgattttaattttacttctt-aaaaaacgttttaaaattagcatacatcaaaaaga |
52162280 |
T |
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| Q |
508 |
atgt |
511 |
Q |
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|||| |
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| T |
52162279 |
atgt |
52162276 |
T |
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