View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1315_low_4 (Length: 458)
Name: NF1315_low_4
Description: NF1315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1315_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 38 - 446
Target Start/End: Original strand, 25177864 - 25178269
Alignment:
| Q |
38 |
ataatatagtgaaaatgtaaacatcactataaccggttaccgaccccatcaattaacatcaaatatttatgtaagtataatatttacatccgtatcatgt |
137 |
Q |
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| T |
25177864 |
ataatatagtgaaaatgaaaacatcactataaccggttaccgaccccatcaattaacatcaaatatttatgtaagtataatatttacatccgtatcatgt |
25177963 |
T |
|
| Q |
138 |
caaagacaatnnnnnnnnnnnnnnnnnnntgcattgcaaaattcaaagacttgtcctagtttatttcgatgattattcatgttaaacgttatgctaatat |
237 |
Q |
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| T |
25177964 |
caaagacaat-aaaaaaaaatccaaaaaatgcattgcaaaattcaaagaattatcctagtttatttcgatcattattcatgttaaacgttatgctaatat |
25178062 |
T |
|
| Q |
238 |
ttctacacatcatttagttggaannnnnnnnnnnaattatgtagagaaatgtcatgtttgttttacctagattaagaacttaatgatattcttttttcca |
337 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25178063 |
ttctacacatcatttagttgga--ttttttttttaattatgtagagaaatgtcatgtttgttttacctagattaagaacttaatgatattcttttttcca |
25178160 |
T |
|
| Q |
338 |
tcaaaactaacgataaaagaaattttgtaaacaaagnnnnnnnncatgaacaaagaaatatttgcatcc-tcctcttcaagagagaatggaatggaaata |
436 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25178161 |
tcaaaactaacgataaaagaaattttgtaaacaaag-aaaaaaacatgaacaaaaaaatatttgcatccttcctcttcaagagagaatggaatggaaata |
25178259 |
T |
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| Q |
437 |
gggtgaccta |
446 |
Q |
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| T |
25178260 |
gggtgaccta |
25178269 |
T |
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