View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1315_low_5 (Length: 418)
Name: NF1315_low_5
Description: NF1315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1315_low_5 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 33644563 - 33644971
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644563 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
33644662 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33644663 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagac |
33644762 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644763 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcga |
33644862 |
T |
|
| Q |
307 |
ccattatggaactagttttacctaagaattcctatatgaattgttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644863 |
ccattatggaactagttttacctaagaattcctatatgaatttttggagaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaag |
33644962 |
T |
|
| Q |
407 |
tcacctatg |
415 |
Q |
| |
|
||||||||| |
|
|
| T |
33644963 |
tcacctatg |
33644971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 33304469 - 33304196
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||| |||||| |
|
|
| T |
33304469 |
gattgttcattttcaactgtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggttgacacaattcattgaggcaaactcacaatc |
33304370 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|||||| || | ||||||| ||| ||||||||| |||||||||| ||||||||||| ||||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
33304369 |
ctaccctacgtcctttgattggattcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagac |
33304270 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||||| |||||||||| |
|
|
| T |
33304269 |
cgatctcctattatgcatgacaataacaattatatcattggctttctatgttgtgcggtattttccatggcacc |
33304196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 33262611 - 33262338
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| ||| ||| |||||| |
|
|
| T |
33262611 |
gattggtcattttcaactgtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggacgacacaattcattcaagcataccaacaatc |
33262512 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|||||| || || || ||| | ||||||||| | |||||||| ||||||||||||||||||||||||||| || ||||||||||||||| | ||||| |
|
|
| T |
33262511 |
ctaccctacttatttggatgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagac |
33262412 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||| ||| ||||||||| |||||| ||||| |||| |
|
|
| T |
33262411 |
caaactcctattatgcatgataataacaataatatcattggctttctatgttgtgttgtattttccatgacacc |
33262338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 33388139 - 33387870
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||||| ||||| ||||||| |||||||||||||||||||||| |||||| ||| ||||||||| |||| | |
|
|
| T |
33388139 |
gattgatcgttttcaactgtccaaaactgggtgatagggagtgttgcagtagcatgacattttcatggatgacacaatttattaaggcaaaccgacaaac |
33388040 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|||||| |||| ||||||| || ||||||||| ||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
33388039 |
ctaccctgcctattttgatacgattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagac |
33387940 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
276 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
33387939 |
aaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatgg |
33387870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 33285581 - 33285306
Alignment:
| Q |
8 |
attggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcc |
107 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||| ||| | |
|
|
| T |
33285581 |
attggtcattttcaactgtccaaaattaggtgaaagggaacgttgcagtagcatggcattttcatggatgatacaattcatccaggcataccaacacttt |
33285482 |
T |
|
| Q |
108 |
tacccaacctactt---tgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatag |
204 |
Q |
| |
|
||||| | | ||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| || ||||| || |||||| |||||||| ||||| |
|
|
| T |
33285481 |
taccctgcgtccttatttgaagggattcatattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatag |
33285382 |
T |
|
| Q |
205 |
acgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||| |
|
|
| T |
33285381 |
acagatctcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtgttttccgtggcacc |
33285306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 9166737 - 9166473
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||| | ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||| || ||| |
|
|
| T |
9166737 |
gattggtcattttcaactgtccagaattgagtgataaggaacattgcagtagcatgacattttcatggatgatgcaatttattcaggcaaacccaccatc |
9166638 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
| || |||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||| || |||| || ||| |||| ||||||| |
|
|
| T |
9166637 |
ccac---------tttgataggattcaaattgttacgccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagac |
9166547 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9166546 |
ctaactcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtattctccatggcacc |
9166473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 28870198 - 28870446
Alignment:
| Q |
13 |
tcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctaccc |
112 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||| | |||||| ||||||||||||||| ||||||||||| |||| ||| ||||||||||| |
|
|
| T |
28870198 |
tcattttcaactgtccaaatttaggtgagagggaacgttgttgtagcatggcattttcatggatgaaacaattcattcgggcataccgacaatcctacct |
28870297 |
T |
|
| Q |
113 |
aacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatct |
212 |
Q |
| |
|
||| || ||| | | | ||||| ||||||||||||||||||||||||||||| |||||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
28870298 |
tgtctatttggatgcgtttaatattgttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatct |
28870397 |
T |
|
| Q |
213 |
cctattatgcatgacaataacaataatatcattggatttgtatgttgtg |
261 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28870398 |
cctattataaatgacaataacaataatatcattggctttgtatgttgtg |
28870446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 33399039 - 33398788
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || | |||||| |
|
|
| T |
33399039 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcagtagcatgacattttcatggatgatacaattcattctggccaatccacaatc |
33398940 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
| |||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33398939 |
c------acct------------ctcaaattgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagac |
33398858 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
276 |
Q |
| |
|
||||||| ||||||||| ||||||||| | | | | |||||||||||||||||||||||||||| |
|
|
| T |
33398857 |
ctatctcctgctatgcatgataataacaatcagagccattactttgtatgttgtgcagtatttaccatgg |
33398788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 33057551 - 33057290
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||||||||| || || |
|
|
| T |
33057551 |
gattgctcattttcaactgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttc |
33057452 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|| || || ||| |||||| || | |||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||| |
|
|
| T |
33057451 |
ct-------cttctgagat-----tcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatagac |
33057364 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
33057363 |
cgatctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcatttacgatggcacc |
33057290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 33409957 - 33409690
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||| ||| ||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
33409957 |
gattgttcattttcaactgtccaaaattggttgagagggaacgttgcagtagcatcacaatttcatggatggcacatttcattcaggcaaaccaacaa-- |
33409860 |
T |
|
| Q |
107 |
ctacccaacctactttgataggact-caaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaataga |
205 |
Q |
| |
|
|||||| | ||| | || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||| || |
|
|
| T |
33409859 |
---cccaacaaa--ttgtcggcgcttcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattga |
33409765 |
T |
|
| Q |
206 |
cgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| ||||| |||||| |||||| | || || |||||||||| |
|
|
| T |
33409764 |
tgaatctcctgttataaatgacaataacaataatattattggctttgtaagttgtgtattaatttccatggcacc |
33409690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 31562841 - 31563109
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacct |
100 |
Q |
| |
|
||||||||||||| |||||| | ||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||| | | |
|
|
| T |
31562841 |
gattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggcatatcc |
31562940 |
T |
|
| Q |
101 |
acaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaa |
200 |
Q |
| |
|
||| |||||||| |||| || ||| | ||| ||||| |||||||||||||||||| | ||||||||||||||| || ||||||||||||||| | |
|
|
| T |
31562941 |
acactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaatacca |
31563040 |
T |
|
| Q |
201 |
atagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtattt |
269 |
Q |
| |
|
||||| |||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
31563041 |
atagagttctctcctcctatgcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattt |
31563109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 33271777 - 33271582
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33271777 |
gattggtcattttcaactgtccaaaattggctgactgtgagagggaacgttgcagtagcttgacattttcatggatgatacaattcattatggcaaaccc |
33271678 |
T |
|
| Q |
101 |
acaatcctacccaacctactttgatag-gactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaataca |
199 |
Q |
| |
|
||||| || ||||| | | ||| ||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
33271677 |
gcaatctta----------tttgaatgagtttcatattataactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgatacc |
33271588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 412
Target Start/End: Complemental strand, 33358716 - 33358513
Alignment:
| Q |
209 |
atctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgacc |
308 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |||| | | | || ||||| ||| | || |
|
|
| T |
33358716 |
atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctcagcatgggtattttccaccgtggtcc |
33358617 |
T |
|
| Q |
309 |
attatggaactagttttacctaagaattcctatatgaattgttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtc |
408 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| | || ||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
33358616 |
cttatggaactgactttaactacagattccaatagtattttgaggaaaatgagtgttccagtaattctcaatggaggtcttattacgcccaaatcaagtc |
33358517 |
T |
|
| Q |
409 |
acct |
412 |
Q |
| |
|
|||| |
|
|
| T |
33358516 |
acct |
33358513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 33358849 - 33358714
Alignment:
| Q |
39 |
gagagggaacgttgcaggagcatgacattttcatggatgatacaattcattca----ggcaaacctacaatcctacccaacctactttgataggactcaa |
134 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |||||||||||| |||||||| || ||||||||| ||| ||| |||| | |||| |
|
|
| T |
33358849 |
gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaa |
33358750 |
T |
|
| Q |
135 |
attgtaactccaggaagtgaaataccaagttggatc |
170 |
Q |
| |
|
|| || ||||||||||||||||| | |||||||||| |
|
|
| T |
33358749 |
atagttactccaggaagtgaaatgctaagttggatc |
33358714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 33387810 - 33387749
Alignment:
| Q |
354 |
aaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
415 |
Q |
| |
|
||||| ||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
33387810 |
aaaatgagtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatg |
33387749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 28870548 - 28870594
Alignment:
| Q |
369 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
415 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
28870548 |
gtaattatcgatagagatcttattacgaccaaatcaagtcacctatg |
28870594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 33271447 - 33271417
Alignment:
| Q |
385 |
gtcttattacgaccaaatcaagtcacctatg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33271447 |
gtcttattacgaccaaatcaagtcacctatg |
33271417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 33304119 - 33304073
Alignment:
| Q |
369 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
415 |
Q |
| |
|
||||||||| |||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
33304119 |
gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatg |
33304073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 629 - 356
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
629 |
gattggtcattttcaactgtccaaaattgggtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaatc |
530 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|||| | || || || | ||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| ||||||| |
|
|
| T |
529 |
ctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagac |
430 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
429 |
gaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacc |
356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 6375 - 6102
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
6375 |
gattggtcattttcaactgtccaaaattgggtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaatc |
6276 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|||| | || || || | ||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| ||||||| |
|
|
| T |
6275 |
ctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagac |
6176 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
6175 |
gaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacc |
6102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 31479031 - 31479293
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31479031 |
gattgttcattttcaactgtcctaaattgggtgaaacggaacgttggagtagcatgacattttcatggatgatacaattcattcaggcaaaccgacaatt |
31479130 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|| || || || ||||||| ||||||||| |||||||| |||||||| ||||||||| |||||||||| || |||| ||| ||||| |||||| |
|
|
| T |
31479131 |
ctcccatgactcctctgatagggttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagat |
31479230 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtattt |
269 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||| | ||||||||||| ||||||| |
|
|
| T |
31479231 |
tcttctccgattatgcacgacaataacaataatatcgttggctgtgtatgttgtgtagtattt |
31479293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 31472570 - 31472835
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaac---gttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctaca |
103 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
31472570 |
gattgctcattttcaactgtcctaatttgggtgagagggaacattgttgcactaacatgacattttcatggatgatacaactcattcaggcaaatccaca |
31472669 |
T |
|
| Q |
104 |
atcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
203 |
Q |
| |
|
||||| ||| || | ||||| | ||| ||||| ||||||||||||||||||||||||||| |||||||||| | ||||||||| |||| | || |
|
|
| T |
31472670 |
atccttccctgactgttatgatataattcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgatta |
31472769 |
T |
|
| Q |
204 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtattt |
269 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||| | | ||||||||| ||||||| |
|
|
| T |
31472770 |
gactcatctcccattatgcatgacaataacaataatatcattggttgtatatgttgtgtagtattt |
31472835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 135 - 280
Target Start/End: Original strand, 31499206 - 31499351
Alignment:
| Q |
135 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
234 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| | || ||||| || |||||||||||||| ||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
31499206 |
attgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaataaca |
31499305 |
T |
|
| Q |
235 |
ataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
280 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
31499306 |
ataatatcattggctttgtatgttgtgcagtattttctatggcacc |
31499351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 6 - 287
Target Start/End: Original strand, 31504215 - 31504490
Alignment:
| Q |
6 |
agattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaat |
105 |
Q |
| |
|
|||||| | |||||||||||| | ||||||| |||||||||| | | || || |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
31504215 |
agattgcttattttcaactgtcctaaattggatgagagggaatgctacattagaatgacattttcatggatgatacaattcattaaggcaaacccacaat |
31504314 |
T |
|
| Q |
106 |
cct-acccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatag |
204 |
Q |
| |
|
||| | || | ||||||| || || || ||| || ||||| |||| |||||||||||||||| |||||||| | || |||| || |||||||||| |
|
|
| T |
31504315 |
cctcatccga-ctactttcatgtgattc-aatcgttactcctggaaatgaaataccaagttggttcaacaattagagcaagggtcgctccatacaaatag |
31504412 |
T |
|
| Q |
205 |
acgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgt |
287 |
Q |
| |
|
| || | ||||||||||| ||| |||||||||||||| | ||||||||||| ||||||| |||||| ||| |||||| |
|
|
| T |
31504413 |
a-----ctggtcttatgcatgactttaaaaataatatcattggttgtgtatgttgtgtagtattttccatggaacctcgtcgt |
31504490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 31148268 - 31148111
Alignment:
| Q |
12 |
gtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacc |
111 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||| | ||||||| ||||||||||||||||||| |||||| ||| |||| |||||||| |
|
|
| T |
31148268 |
gtcattttcaactgtcctaaattgggtgagagggaatgttggaatagcatgatattttcatggatgatacaactcattcgggcgaacccacaatcct--- |
31148172 |
T |
|
| Q |
112 |
caacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatca |
178 |
Q |
| |
|
|| | |||| || ||||||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
31148171 |
ca------tctgatgtgattcaaattgttactccgggaagtgaaataccaagttggttcaacaatca |
31148111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 31157211 - 31157122
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaa |
96 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||| ||||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
31157211 |
gattggtcattttcaactgtcctaaattgggtgagagtgaagattgcaatagcatggcattttcatggatgatacaattgattcaggcaa |
31157122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 31157082 - 31156947
Alignment:
| Q |
133 |
aaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataa |
232 |
Q |
| |
|
||||||| | ||| |||||||||||||||| |||| |||||||||| || | ||||||||||||| ||| ||| ||||| |||||| | ||||| | |
|
|
| T |
31157082 |
aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaataagaatggacctatctcagattatggacaacaatga |
31156983 |
T |
|
| Q |
233 |
caataatatcattggatttgtatgttgtgcagtatt |
268 |
Q |
| |
|
|||| || ||||||| ||| |||||||||||||| |
|
|
| T |
31156982 |
caatgatttcattggcattgcttgttgtgcagtatt |
31156947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 31484918 - 31484966
Alignment:
| Q |
133 |
aaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaag |
181 |
Q |
| |
|
||||||| | |||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
31484918 |
aaattgttattccaggcagtgaaataccaagctggttcaacaatcaaag |
31484966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 7 - 325
Target Start/End: Original strand, 17440903 - 17441203
Alignment:
| Q |
7 |
gattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatc |
106 |
Q |
| |
|
||||| |||| ||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
17440903 |
gattgttcatcttcaactgtccaaaattgggtgagagggaatgttacagtagcatgacattttcatggatgatgcaattcattaaggcaa---------- |
17440992 |
T |
|
| Q |
107 |
ctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagac |
206 |
Q |
| |
|
|||| ||| || |||||| ||| ||||| | ||||||||| |||||||||||||||||||||||| | || ||||||||||||||| ||||||| |
|
|
| T |
17440993 |
--accctttctatttgaataggattcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagac |
17441090 |
T |
|
| Q |
207 |
gaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcga |
306 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| | |||| || || ||||||||||| |
|
|
| T |
17441091 |
caatctcctattaagcatg------acaataatatcattggttttgtatgttgtgcagtattttccatggcacctcatcgtgggaggtttccatcgtcgg |
17441184 |
T |
|
| Q |
307 |
ccattatggaactagtttt |
325 |
Q |
| |
|
|| ||||||||| ||||| |
|
|
| T |
17441185 |
cccatatggaactggtttt |
17441203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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