View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1315_low_6 (Length: 414)

Name: NF1315_low_6
Description: NF1315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1315_low_6
NF1315_low_6
[»] chr6 (2 HSPs)
chr6 (13-385)||(15869396-15869768)
chr6 (330-381)||(34032678-34032729)
[»] chr7 (13 HSPs)
chr7 (13-385)||(22797279-22797645)
chr7 (255-385)||(28369275-28369405)
chr7 (255-385)||(5578955-5579089)
chr7 (255-382)||(321938-322065)
chr7 (255-365)||(38609283-38609394)
chr7 (255-385)||(23839294-23839423)
chr7 (255-383)||(39894796-39894920)
chr7 (255-383)||(7932286-7932411)
chr7 (255-382)||(3120773-3120901)
chr7 (316-382)||(1011469-1011535)
chr7 (316-382)||(1012331-1012397)
chr7 (330-385)||(29907248-29907303)
chr7 (255-284)||(7553536-7553565)
[»] chr8 (13 HSPs)
chr8 (255-385)||(32593516-32593646)
chr8 (255-385)||(8471893-8472023)
chr8 (255-385)||(8472670-8472800)
chr8 (255-385)||(32051647-32051777)
chr8 (255-385)||(18471219-18471349)
chr8 (255-383)||(7066165-7066293)
chr8 (255-383)||(33493844-33493973)
chr8 (255-381)||(8194359-8194484)
chr8 (255-347)||(32690288-32690380)
chr8 (255-356)||(33085284-33085385)
chr8 (290-382)||(20075653-20075747)
chr8 (255-384)||(541646-541773)
chr8 (316-353)||(539488-539525)
[»] chr2 (14 HSPs)
chr2 (255-385)||(2007118-2007248)
chr2 (255-385)||(14931917-14932047)
chr2 (255-369)||(23220960-23221074)
chr2 (261-385)||(17625750-17625874)
chr2 (261-385)||(17670137-17670261)
chr2 (255-382)||(24201234-24201360)
chr2 (255-385)||(13220089-13220219)
chr2 (255-385)||(33896783-33896913)
chr2 (255-380)||(25432744-25432868)
chr2 (302-385)||(37469287-37469370)
chr2 (290-381)||(35942094-35942185)
chr2 (257-325)||(3304549-3304617)
chr2 (255-385)||(11493769-11493908)
chr2 (255-304)||(38500601-38500650)
[»] chr5 (9 HSPs)
chr5 (255-385)||(27828369-27828499)
chr5 (255-384)||(43432133-43432262)
chr5 (256-385)||(7518858-7518987)
chr5 (255-382)||(4446384-4446511)
chr5 (274-385)||(27827557-27827672)
chr5 (298-382)||(4445512-4445595)
chr5 (293-362)||(27827436-27827505)
chr5 (258-341)||(23498376-23498459)
chr5 (307-379)||(9479568-9479641)
[»] chr3 (10 HSPs)
chr3 (255-383)||(20269907-20270035)
chr3 (257-361)||(26218770-26218874)
chr3 (266-381)||(55242339-55242454)
chr3 (298-381)||(40268362-40268445)
chr3 (255-385)||(48596817-48596950)
chr3 (252-336)||(28767629-28767713)
chr3 (322-385)||(28767471-28767534)
chr3 (261-364)||(109608-109711)
chr3 (255-382)||(46143447-46143575)
chr3 (266-369)||(44399607-44399709)
[»] chr4 (19 HSPs)
chr4 (255-385)||(41223930-41224060)
chr4 (255-382)||(39437175-39437301)
chr4 (258-385)||(44897940-44898067)
chr4 (255-385)||(47442065-47442195)
chr4 (255-382)||(37078992-37079118)
chr4 (303-385)||(6848659-6848741)
chr4 (255-382)||(49529489-49529613)
chr4 (255-382)||(37078263-37078389)
chr4 (255-382)||(50848170-50848298)
chr4 (255-377)||(22383979-22384096)
chr4 (255-385)||(28501878-28502002)
chr4 (255-385)||(50853899-50854029)
chr4 (255-328)||(16184707-16184780)
chr4 (333-384)||(16184959-16185010)
chr4 (330-384)||(13188115-13188169)
chr4 (265-381)||(34611880-34611993)
chr4 (255-302)||(13188078-13188125)
chr4 (255-382)||(32476643-32476765)
chr4 (290-381)||(47366188-47366279)
[»] chr1 (7 HSPs)
chr1 (255-385)||(32754958-32755088)
chr1 (257-385)||(37827844-37827972)
chr1 (257-377)||(46859617-46859737)
chr1 (255-382)||(25104767-25104893)
chr1 (255-382)||(45395797-45395923)
chr1 (255-382)||(14613885-14614011)
chr1 (316-382)||(1908252-1908318)


Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 15869768 - 15869396
Alignment:
Q  13 aatattaaagcgggattatttactaataagttgttaggactgaaaatgtgaatgtgggaccaaaagggcaaatagtacagcagttgcccaagcatgcatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869768 aatattaaagcgggattatttactaataagttgttaggactgaaaatgtgaatgtgggaccaaaagggcaaatagtacagcagttgcccaagcatgcatt 15869669  T
Q  113 gtgcatcattttatcaggaaaatataggaatgtggaacgtggaatgcaacttggcagagggggagtctattctgtgacttgtttcggatataagggaatg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15869668 gtgcatcattttatcaggaaaatataggaatgtggaacgtggaatgcaacttggcagacggggagtctattctgtgacttgtttcggatataagggaatg 15869569  T
Q  213 tgaggagagaggggtatcattcacatctttttagttagaaacttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgtt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869568 tgaggagagaggggtatcattcacatctttttagttagaaacttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgtt 15869469  T
Q  313 attactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaacc 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869468 attactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaacc 15869396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 34032729 - 34032678
Alignment:
Q  330 caacttcataggctagtgcttactcattaagcattcaatgtatttattgtaa 381  Q
    ||||||| |||| ||||||| |||||||||| ||| ||||||||||||||||    
T  34032729 caacttcctaggttagtgctcactcattaagaattaaatgtatttattgtaa 34032678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 22797279 - 22797645
Alignment:
Q  13 aatattaaagcgggattatttactaataagttgttaggactgaaaatgtgaatgtgggaccaaaagggcaaatagtacagcagttgcccaagcatgcatt 112  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||  ||||    
T  22797279 aatattaatgcaggattatttactaataagttgttaggactgaaaatgtgaatgtgggaccaaaagggcaaatagtac---------ccaagcacccatt 22797369  T
Q  113 gtgcatcattttatcaggaaaatataggaatgtggaacgtggaatgcaacttggcagagggggagtctattctgtgacttgtttcggatataagggaatg 212  Q
    ||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  22797370 gtgcatagttttatgaggaaaatataggaatgtggagcgtggaatgcaacttggcagagggggagtctattgtgtgacttgtttccgatataagggaatg 22797469  T
Q  213 t--gaggagagaggggtatcattc-acatctttttagttagaaact-taaaattaagaatctttagatattcctttcatggtacaactccctagattgat 308  Q
    |  |||||||||||||||||||||  |||||||| ||||| ||||| | | | |||||||||||||||||| |||| |||||||||||||||||||||||    
T  22797470 tgagaggagagaggggtatcattcgtcatcttttcagttaaaaactgttataataagaatctttagatatt-ctttaatggtacaactccctagattgat 22797568  T
Q  309 tgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||| |||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||||||||||    
T  22797569 tgttattacccctagagtatacaacttcctaagctagtgtttactcattaagcattcaatgtatttattgtaaaacc 22797645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 28369275 - 28369405
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||||||  |||||||||||||||| |||||||  |||||||||||||||     
T  28369275 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgccattactcctagagtatacaacttccgaggctagtgcttacta 28369374  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
     ||||||| ||||||||||||||||||||||    
T  28369375 gttaagcactcaatgtatttattgtaaaacc 28369405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 5578955 - 5579089
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtaca----actccctagattgattgttattactcctagagtatgcaacttcataggctagtgctt 350  Q
    |||||||||||||||||||||||||||||| || | ||     ||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  5578955 ttaaaattaagaatctttagatattcctttaattgaactgatgacttcctagattgattgttattacttctagagtatacaacttcctaggctagtgctt 5579054  T
Q  351 actcattaagcattcaatgtatttattgtaaaacc 385  Q
     ||||||||||||||||||| ||||||||||||||    
T  5579055 gctcattaagcattcaatgtgtttattgtaaaacc 5579089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 321938 - 322065
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||||||||||| |   ||||||| |||||||||||| |||| ||||||||||||| ||||||| | || |||||||||||     
T  321938 ttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttacta 322037  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | ||||||||||||||||||||||||||    
T  322038 aataagcattcaatgtatttattgtaaa 322065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 365
Target Start/End: Original strand, 38609283 - 38609394
Alignment:
Q  255 ttaaaattaagaatctttagatattcc-tttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttact 353  Q
    ||||||||||||||||||||||||||| ||| || |||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  38609283 ttaaaattaagaatctttagatattccctttaattgtacaacttcctaaattgattgttattactcctagagtatacaacttcctaggctagtgcgtact 38609382  T
Q  354 cattaagcattc 365  Q
    ||||||||||||    
T  38609383 cattaagcattc 38609394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 23839294 - 23839423
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||||||||| ||  ||||||| |||||||||||||| || |||||||||||||  |||||| ||||||||||||||||     
T  23839294 ttaaagttaagaatctttagatattcctttgattatacaacttcctagattgattgt-ataactcctagagtatttaacttcctaggctagtgcttacta 23839392  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||| | |||||||||||||    
T  23839393 attaagcattcaatgcacttattgtaaaacc 23839423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 383
Target Start/End: Original strand, 39894796 - 39894920
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||||||||||||||| |||||||||||| || ||| |||| |||  |||||||||||||    ||||||||| ||||||| ||||||||||| |||||    
T  39894796 ttaaaattaagaatcttcagatattcctttaattgtataacttcctgcattgattgttatt----ctagagtatacaacttcctaggctagtgcctactc 39894891  T
Q  355 attaagcattcaatgtatttattgtaaaa 383  Q
    ||||||||||||||| |||||||||||||    
T  39894892 attaagcattcaatgcatttattgtaaaa 39894920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 255 - 383
Target Start/End: Original strand, 7932286 - 7932411
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||||||||||| ||  |||||||||||| || |||||||| |||||||||||||| | |||||||||  ||| ||||||| |||||||||||||||||    
T  7932286 ttaaaattaagaa-ctacagatattcctttaattgtacaacttcctagattgattgtcactactcctag--tatacaacttcctaggctagtgcttactc 7932382  T
Q  355 attaagcattcaatgtatttattgtaaaa 383  Q
    ||||||||||||||  |||||||||||||    
T  7932383 attaagcattcaattaatttattgtaaaa 7932411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 382
Target Start/End: Complemental strand, 3120901 - 3120773
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcct-agagtatgcaacttcataggctagtgcttact 353  Q
    |||||| ||||||| ||||||||||||||| || |||||||| |||||||||||||| ||||||| | ||||| | ||||||| ||  ||||||||||||    
T  3120901 ttaaaagtaagaatatttagatattcctttaattgtacaacttcctagattgattgtcattactcttaagagtgttcaacttcctaatctagtgcttact 3120802  T
Q  354 cattaagcattcaatgtatttattgtaaa 382  Q
     | ||||||||||||||||||||||||||    
T  3120801 aaataagcattcaatgtatttattgtaaa 3120773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 1011469 - 1011535
Alignment:
Q  316 actcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaa 382  Q
    ||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  1011469 actcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaa 1011535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 1012331 - 1012397
Alignment:
Q  316 actcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaa 382  Q
    ||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  1012331 actcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaa 1012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 29907248 - 29907303
Alignment:
Q  330 caacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaacc 385  Q
    |||||||  ||||||||||||||| | ||||||||||||| ||||| |||||||||    
T  29907248 caacttccaaggctagtgcttacttactaagcattcaatgcatttagtgtaaaacc 29907303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 7553536 - 7553565
Alignment:
Q  255 ttaaaattaagaatctttagatattccttt 284  Q
    ||||||||||||||||||||||||||||||    
T  7553536 ttaaaattaagaatctttagatattccttt 7553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 32593516 - 32593646
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||| ||||||||||||| || |||||||| |||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||     
T  32593516 ttaaaattaagaatctatagatattcctttaattgtacaacttcctagattgattgttcctactcctagagtatacaacttcctaggctagtgcttacta 32593615  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||||||||||| |||||||    
T  32593616 attaagcattcaatgtatttattataaaacc 32593646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 8471893 - 8472023
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||     
T  8471893 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgttattactcgtagagtattcaactccctaggctagtgcttacta 8471992  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||| | ||||| |||||||    
T  8471993 attaagcattcaatgcacttattctaaaacc 8472023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 8472670 - 8472800
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| || |||||||| ||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||     
T  8472670 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattggttgttattactccaagagtattcaacttcttaggctagtgcttacta 8472769  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||| |  ||||||||||||    
T  8472770 attaagcattcaatgcacctattgtaaaacc 8472800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 32051777 - 32051647
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||||||||||||||| ||||||||||||  |  |||||||| ||||||||||| ||||||||| |||| ||| ||||||| ||||||||||||||||     
T  32051777 ttaaaattaagaatcttcagatattcctttggttatacaactctctagattgatttttattactcttagactatacaacttcctaggctagtgcttacta 32051678  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||| |||||||||||||||||||||||    
T  32051677 attaagcgttcaatgtatttattgtaaaacc 32051647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 18471349 - 18471219
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||| |||||||| || ||||||| || |||||||| ||||||||||||||||||||| ||| ||||| ||||||| |||| ||||||||||||    
T  18471349 ttaaagttaacaatctttacatgttcctttaattgtacaacttcctagattgattgttattacttctaaagtatacaacttcctagggtagtgcttactc 18471250  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||| |||||| ||||||||    
T  18471249 attaagcattcaatgcatttatcgtaaaacc 18471219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 255 - 383
Target Start/End: Complemental strand, 7066293 - 7066165
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||||||||| ||  ||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||     
T  7066293 ttaaagttaagaatctttagatattcctttaattatacaacttcctagattgattgttgttactcctagagtattcaacttcctaggctagtgcttacta 7066194  T
Q  355 attaagcattcaatgtatttattgtaaaa 383  Q
    || ||| |||||||| | | |||||||||    
T  7066193 atgaagtattcaatgcactaattgtaaaa 7066165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 255 - 383
Target Start/End: Complemental strand, 33493973 - 33493844
Alignment:
Q  255 ttaaaattaagaatctttagatat--tcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttac 352  Q
    ||||||||||||||||||||||||  |||||| ||  ||||||| |||||||||| |||||||||||||||||||| ||||||  |||||||||||||||    
T  33493973 ttaaaattaagaatctttagatatattcctttaattctacaacttcctagattgagtgttattactcctagagtattcaactttctaggctagtgcttac 33493874  T
Q  353 tcattaagcattcaatgtatttattgtaaaa 383  Q
    | | | |||||||||||||||||||||||||    
T  33493873 taaat-agcattcaatgtatttattgtaaaa 33493844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 381
Target Start/End: Original strand, 8194359 - 8194484
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||| ||||||| ||||| ||| || |||| ||| |||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||     
T  8194359 ttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttacta 8194457  T
Q  355 attaagcattcaatgtatttattgtaa 381  Q
    ||||||||||||||| | |||||||||    
T  8194458 attaagcattcaatgcacttattgtaa 8194484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 347
Target Start/End: Complemental strand, 32690380 - 32690288
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 347  Q
    ||||||||||||||||||||| |||||||| || ||| |||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  32690380 ttaaaattaagaatctttagacattcctttaattgtataacttcctaggttgattgttattactcctagagtatacaacttcctaggctagtg 32690288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 255 - 356
Target Start/End: Original strand, 33085284 - 33085385
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||| ||||||| || |||| ||| ||||||||||||| |||||||||||| |||| ||||||| ||||  ||||| |||||    
T  33085284 ttaaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctagggtatacaacttcttaggacagtgcatactc 33085383  T
Q  355 at 356  Q
    ||    
T  33085384 at 33085385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 20075747 - 20075653
Alignment:
Q  290 tacaactccctagattgattgttattactcctaga--gtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaa 382  Q
    ||||||| |||||||||||| |||||| ||||| |  |||| ||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||    
T  20075747 tacaacttcctagattgattcttattaatcctatatagtatacaacttcctaggctactgcttactcattaagcatccaatgcatttattgtaaa 20075653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 384
Target Start/End: Complemental strand, 541773 - 541646
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||   |||||||||||||| || ||| |  | |||| |||||||||| |||||  |  ||||| ||||||| ||| ||  ||||||||     
T  541773 ttaaaattaagaac--ttagatattcctttaattgtatagattcctatattgattgttcttacttttgaagtatacaacttcctagtctcttgcttacta 541676  T
Q  355 attaagcattcaatgtatttattgtaaaac 384  Q
    |||||||||| |||| ||||||||||||||    
T  541675 attaagcattgaatgcatttattgtaaaac 541646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 539525 - 539488
Alignment:
Q  316 actcctagagtatgcaacttcataggctagtgcttact 353  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  539525 actcctagagtattcaacttcctaggctagtgcttact 539488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 2007248 - 2007118
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| ||||| ||| ||| ||||||| ||||||||     
T  2007248 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttattactcctatagtatacaatttcctaggctaatgcttacta 2007149  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||| |||||||||||||||||||    
T  2007148 attaagcattcgatgtatttattgtaaaacc 2007118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 14932047 - 14931917
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||||||||||||||||||||||| |||| || |||||||| ||||| |||||| |||||||||||||||||| || |||| |||||||||||||||||    
T  14932047 ttaaaattaagaatctttagatatttctttaattgtacaacttcctaggttgatttttattactcctagagtatacatcttcctaggctagtgcttactc 14931948  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||| ||| ||||| |||||||||||||||    
T  14931947 attaaacatgcaatgcatttattgtaaaacc 14931917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 255 - 369
Target Start/End: Original strand, 23220960 - 23221074
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||     
T  23220960 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgatattactcctagagtattcaacttcctatgctagtgcttacta 23221059  T
Q  355 attaagcattcaatg 369  Q
    |||||||||||||||    
T  23221060 attaagcattcaatg 23221074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 261 - 385
Target Start/End: Original strand, 17625750 - 17625874
Alignment:
Q  261 ttaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaag 360  Q
    |||||||||||||||||||  ||| |  |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  17625750 ttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtgcttactaattaag 17625849  T
Q  361 cattcaatgtatttattgtaaaacc 385  Q
    ||||||||| | |||||||||||||    
T  17625850 cattcaatgcacttattgtaaaacc 17625874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 261 - 385
Target Start/End: Original strand, 17670137 - 17670261
Alignment:
Q  261 ttaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaag 360  Q
    |||||||||||||||||||  ||| |  |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  17670137 ttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtgcttactaattaag 17670236  T
Q  361 cattcaatgtatttattgtaaaacc 385  Q
    ||||||||| | |||||||||||||    
T  17670237 cattcaatgcacttattgtaaaacc 17670261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 24201234 - 24201360
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| || |||||||| |||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||     
T  24201234 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttacta 24201332  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | ||||||||||||||||||||||||||    
T  24201333 aataagcattcaatgtatttattgtaaa 24201360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 13220219 - 13220089
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||| ||||||| |||||||||| | |||     
T  13220219 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagtttaattgttattactcctagagtatacaacttcttaggctagtgttcactt 13220120  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||| ||| ||||||||| |||||    
T  13220119 attaagcattctatgcatttattgttaaacc 13220089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 33896913 - 33896783
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||| ||||||||||||| || ||||| || |||||||||||| || ||||| ||||||||| | ||||| ||||||||||||||||     
T  33896913 ttaaaattaagaatctctagatattcctttaattgtacagcttcctagattgattatttttactgctagagtatactacttcttaggctagtgcttacta 33896814  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||||||||||||| |||||    
T  33896813 attaagcattcaatgtatttattgttaaacc 33896783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 25432868 - 25432744
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||| || ||||| || ||||||| || |||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||     
T  25432868 ttaaaattaaaaa-ctttatatgttcctttaattgtacaacttcctagattgattgttattactcctagagtatacaatttcctaggctagtgcttacta 25432770  T
Q  355 attaagcattcaatgtatttattgta 380  Q
    | ||||||||||||||||||||||||    
T  25432769 aataagcattcaatgtatttattgta 25432744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 37469370 - 37469287
Alignment:
Q  302 gattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||    
T  37469370 gattgattgttattactcctagagtatacaacttcctaggctagtgcttattaattaagcattcaatgtatttattgtaaaacc 37469287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 35942185 - 35942094
Alignment:
Q  290 tacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaa 381  Q
    ||||||| ||||||||||||||||||| ||||||||||  ||||||| |||| ||| ||||| ||||||||||| |||||||||||||||||    
T  35942185 tacaacttcctagattgattgttattattcctagagtaaacaacttcctaggttagggcttattcattaagcatccaatgtatttattgtaa 35942094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 3304549 - 3304617
Alignment:
Q  257 aaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagag 325  Q
    ||||||| ||||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||    
T  3304549 aaaattaggaatcttcagatattcctttaattgtacaacttcctagattgattgttattactcctagag 3304617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 11493769 - 11493908
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtat-------gcaacttcataggctagtg 347  Q
    ||||||||||||||||| ||| ||| |||| || |||||||| ||||||||  ||||||||||||||||| |||        ||||||| ||||||||||    
T  11493769 ttaaaattaagaatcttaagaaattactttaattgtacaacttcctagatttgttgttattactcctagaatatacattagacaacttcctaggctagtg 11493868  T
Q  348 cttactcatt-aagcattcaatgta-tttattgtaaaacc 385  Q
    |||||||||| |||||||||||| | ||||||| ||||||    
T  11493869 cttactcattaaagcattcaatgcactttattgcaaaacc 11493908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 38500601 - 38500650
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagat 304  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||    
T  38500601 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagat 38500650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 27828499 - 27828369
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||     
T  27828499 ttaaaattatgaatctttagatattcccttaattgtacaacttcctagattgattgttattactcctagaatatacaacttcctaggctagtgctttctt 27828400  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||| |||||||||||||||    
T  27828399 attaagcattcaatgcatttattgtaaaacc 27828369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 255 - 384
Target Start/End: Complemental strand, 43432262 - 43432133
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||||||||||||||| | |||||||||| || |||||||| | ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||     
T  43432262 ttaaaattaagaatcttcatatattcctttaattgtacaacttcgtagattgattgttattattcctaaagtatgcaacttcctaggctagtgcttactg 43432163  T
Q  355 attaagcattcaatgtatttattgtaaaac 384  Q
    ||||||||||||||| ||||||||||||||    
T  43432162 attaagcattcaatgaatttattgtaaaac 43432133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 7518858 - 7518987
Alignment:
Q  256 taaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactca 355  Q
    |||||||||| |||||||||||||||||| |  |||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |    
T  7518858 taaaattaagcatctttagatattcctttaactgtacaacttcctagattgactgttattactcctagagtatacaacttcctaggctagtgcttactta 7518957  T
Q  356 ttaagcattcaatgtatttattgtaaaacc 385  Q
    |||||| |||||||  ||||||||||||||    
T  7518958 ttaagctttcaatgcttttattgtaaaacc 7518987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 4446384 - 4446511
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||| ||||||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||     
T  4446384 ttaaagttaagaatatttagatatccctttaattgtacaacttcctagattgattg-tataactcctagagtattcaacttcctaggctagtgcttacta 4446482  T
Q  355 attaag-cattcaatgtatttattgtaaa 382  Q
    | |||| ||||||||||||||||||||||    
T  4446483 aataagccattcaatgtatttattgtaaa 4446511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 27827672 - 27827557
Alignment:
Q  274 gatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcatt----aagcattcaatg 369  Q
    |||||||| || || |||||||| ||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||| |||    |||||||||||     
T  27827672 gatattcccttaattgtacaacttcctagattggttgttataactcctagagtatacaacttcctaggctagtgcttacttattaagcaagcattcaatt 27827573  T
Q  370 tatttattgtaaaacc 385  Q
    | ||||||||||||||    
T  27827572 tgtttattgtaaaacc 27827557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 4445512 - 4445595
Alignment:
Q  298 cctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaa 382  Q
    |||||||||||||| || ||||||||||||| ||||||| |||||||||||||||| | |||||||| |||||||||||||||||    
T  4445512 cctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttactaaataagcatttaatgtatttattgtaaa 4445595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 27827505 - 27827436
Alignment:
Q  293 aactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagca 362  Q
    |||| ||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||| ||||||||    
T  27827505 aacttcctagattgattgttcttacacctagagtatacaacttcctaggctagtgcttacttattaagca 27827436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 23498459 - 23498376
Alignment:
Q  258 aaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcatagg 341  Q
    ||||||||||||||||||| ||||||| || |||| ||| ||||||||||||| |||||||||| | |||| ||||||| ||||    
T  23498459 aaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctggggtatacaacttcttagg 23498376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 9479641 - 9479568
Alignment:
Q  307 attgttattactcctagagtatgcaacttcataggc-tagtgcttactcattaagcattcaatgtatttattgt 379  Q
    ||||||||||||| |||||||| ||||||  ||| | ||||| ||||| | |||||||||||||||||||||||    
T  9479641 attgttattactcttagagtatacaactttctagacctagtgtttactaaataagcattcaatgtatttattgt 9479568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 255 - 383
Target Start/End: Complemental strand, 20270035 - 20269907
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||| | ||| ||||||| |||| |||||||||||     
T  20270035 ttaaaattaagaatctttagatattcctttaattgtacaatttcctagattgattgttattactcctacactatacaacttcctaggttagtgcttacta 20269936  T
Q  355 attaagcattcaatgtatttattgtaaaa 383  Q
    |||||| ||||||||||||||||||||||    
T  20269935 attaagtattcaatgtatttattgtaaaa 20269907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 361
Target Start/End: Original strand, 26218770 - 26218874
Alignment:
Q  257 aaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcat 356  Q
    |||||||||||||||||||||||||||| || ||| |||| | ||||||||||||||||| ||||||| ||| |||| || |||| ||||||||||| ||    
T  26218770 aaaattaagaatctttagatattcctttaattgtataacttcatagattgattgttattattcctagaatatacaacatcctaggttagtgcttactaat 26218869  T
Q  357 taagc 361  Q
    |||||    
T  26218870 taagc 26218874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 381
Target Start/End: Original strand, 55242339 - 55242454
Alignment:
Q  266 aatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattc 365  Q
    ||||| ||| ||||||||| |  |||||||| |||||||||||||||| ||  |||||||||| ||||||| |||| ||||||||| ||||||||| ||     
T  55242339 aatctgtagttattcctttaaatgtacaacttcctagattgattgttaatatccctagagtatacaacttcctaggttagtgcttattcattaagcttta 55242438  T
Q  366 aatgtatttattgtaa 381  Q
    ||||||||||||||||    
T  55242439 aatgtatttattgtaa 55242454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 40268362 - 40268445
Alignment:
Q  298 cctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaa 381  Q
    |||||||||||||||| || |||||||||||  ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||    
T  40268362 cctagattgattgttaatattcctagagtatataacttcataggttagtgcttattcattaaccattcaatctatttattgtaa 40268445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 48596950 - 48596817
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctag---tgctta 351  Q
    |||||||||||||| ||||||||||||||| ||  || |||| |||||||||||||||||||||||||||||||  |||||| | || |||   |||| |    
T  48596950 ttaaaattaagaatttttagatattcctttaattttataacttcctagattgattgttattactcctagagtataaaacttccttggttagtgctgctca 48596851  T
Q  352 ctcattaagcattcaatgtatttattgtaaaacc 385  Q
     | | ||||||||||| |||||||||||| ||||    
T  48596850 ataaataagcattcaaagtatttattgtataacc 48596817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 28767713 - 28767629
Alignment:
Q  252 aacttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttc 336  Q
    ||||||||||||| |||||||| |||||| ||| || |||||||| ||||||||||||||||||||  ||||||||| |||||||    
T  28767713 aacttaaaattaaaaatctttaaatattcatttaattgtacaacttcctagattgattgttattacaactagagtatacaacttc 28767629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 28767534 - 28767471
Alignment:
Q  322 agagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  28767534 agagtatacaacttcctaggctagtgcttactcattaagcattcaatacatttattgtaaaacc 28767471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 109711 - 109608
Alignment:
Q  261 ttaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaag 360  Q
    |||| |||||||||||||| |||| || ||||||||  |||||||||||||||||||| || | |||| ||||||  || ||||||||||| || ||||     
T  109711 ttaaaaatctttagatattactttaattgtacaactttctagattgattgttattacttctcgcgtatacaactttctaagctagtgcttattccttaaa 109612  T
Q  361 catt 364  Q
    ||||    
T  109611 catt 109608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 46143447 - 46143575
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| ||||||||| |||||||||||||| ||  |||||||| ||||| |||||||| |||   ||||| ||| ||||||  || | ||||||| | |     
T  46143447 ttaaatttaagaatcgttagatattcctttaattatacaactctctagactgattgttgttaactctagactatacaacttactaagttagtgctaagta 46143546  T
Q  355 att-aagcattcaatgtatttattgtaaa 382  Q
    ||| |||||||||||||||| ||||||||    
T  46143547 attaaagcattcaatgtattgattgtaaa 46143575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 369
Target Start/End: Complemental strand, 44399709 - 44399607
Alignment:
Q  266 aatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattc 365  Q
    ||||| ||||||||||||| ||  ||||||| ||||||||||||||||||  | ||||||||| ||||||| | || ||||| |   | |||||||||||    
T  44399709 aatctgtagatattcctttaattatacaacttcctagattgattgttatt-tttctagagtatacaacttcctgggttagtgttgttttattaagcattc 44399611  T
Q  366 aatg 369  Q
    ||||    
T  44399610 aatg 44399607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 41223930 - 41224060
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||     
T  41223930 ttaaagttaagaatctttagatatgcctttaactgtacaacttcctagattgattgttattactccaagagtatacaacttcctaggctagtgctcacta 41224029  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    | |||||||||||||||||||||||||||||    
T  41224030 aataagcattcaatgtatttattgtaaaacc 41224060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 39437175 - 39437301
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| || |||||||| |||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||     
T  39437175 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-ttataactcctagagtattcaacttcctaggctagtgcttacta 39437273  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | ||||||||||||||||||||||||||    
T  39437274 aataagcattcaatgtatttattgtaaa 39437301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 258 - 385
Target Start/End: Complemental strand, 44898067 - 44897940
Alignment:
Q  258 aaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcatt 357  Q
    |||||||||||||||| |||||||||| || |||||||| || |||||||||||||||||||| ||||||| |  |||| ||||||||| ||||||||||    
T  44898067 aaattaagaatctttacatattcctttaattgtacaacttcccagattgattgttattactccaagagtatactccttcctaggctagttcttactcatt 44897968  T
Q  358 aagcattcaatgtatttattgtaaaacc 385  Q
    |||||||||||| | |||||||||||||    
T  44897967 aagcattcaatgcacttattgtaaaacc 44897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 47442195 - 47442065
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||||||||||||||||||  |||||||||||  || |||| ||||| ||||| ||||||||||||||||||| ||||||  ||| ||||||||||||     
T  47442195 ttaaaattaagaatctttaggaattcctttcattctataacttcctagtttgatagttattactcctagagtatacaacttgctagtctagtgcttacta 47442096  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||||||||||||||| |||||||||||||||    
T  47442095 attaagcattcaatgcatttattgtaaaacc 47442065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 37078992 - 37079118
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| |  |||||||| |||||||||||||| || ||||||||||||| ||||||| ||||||| ||||||||     
T  37078992 ttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctactgcttacta 37079090  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | ||||||||||||||||||||||||||    
T  37079091 aataagcattcaatgtatttattgtaaa 37079118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 6848741 - 6848659
Alignment:
Q  303 attgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaacc 385  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  6848741 attgattgttattactcctagagtatacaacttcctaggctagtgcttactcattaagcattcattgcatttattgtaaaacc 6848659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 49529489 - 49529613
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| ||||||||||||||||   ||||| || |||||||| |||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||     
T  49529489 ttaaagttaagaatctttagatc--cctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttacta 49529585  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | |||||||||||||||||||| |||||    
T  49529586 aataagcattcaatgtatttatggtaaa 49529613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 37078263 - 37078389
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| |  |||||||| |||||||||||||| || ||||||||||||| ||||||  ||||||| || |||||     
T  37078263 ttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattgt-ataactcctagagtattcaactttctaggctactgtttacta 37078361  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | ||||||||||||||||||||||||||    
T  37078362 aataagcattcaatgtatttattgtaaa 37078389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 382
Target Start/End: Complemental strand, 50848298 - 50848170
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactccta-gagtatgcaacttcataggctagtgcttact 353  Q
    ||||| |||||||||||||||||||| ||| ||  | | ||| |||||||||||||  |||||||| | |||||| ||||||| ||||||||||||||||    
T  50848298 ttaaagttaagaatctttagatattcgtttaattattctacttcctagattgattgcgattactcccaagagtattcaacttcctaggctagtgcttact 50848199  T
Q  354 cattaagcattcaatgtatttattgtaaa 382  Q
     |||||||||||||||||||| |||||||    
T  50848198 aattaagcattcaatgtattttttgtaaa 50848170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 22383979 - 22384096
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||||||||||     |||||||| | ||||||||||||||||| ||||| ||||| ||| ||| || ||| ||||||| |     
T  22383979 ttaaaattaagaatctttagatattcctt-----gtacaacttcttagattgattgttattattcctatagtatacaatttcctaagcttgtgcttatta 22384073  T
Q  355 attaagcattcaatgtatttatt 377  Q
    |||||||||||||||||||||||    
T  22384074 attaagcattcaatgtatttatt 22384096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 28502002 - 28501878
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||   ||| ||||||| |||||||||| |||       
T  28502002 ttaaagttaagaatctttagatattcctttaattgtacaacttcctagattgattgtaattactccta---tattcaacttcctaggctagtgatta--- 28501909  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    ||| |||||| |||| |||||||||||||||    
T  28501908 atttagcatttaatgcatttattgtaaaacc 28501878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 50853899 - 50854029
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||| |||| |||||||||||| || |||||||   |||||||||||||||||||||| | | ||| ||||||| ||  ||| ||| ||||     
T  50853899 ttaaaattaagattcttaagatattcctttaattgtacaacattctagattgattgttattactcccacaatatacaacttcctaccctattgcctactt 50853998  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    |||||||| | |||| ||||| ||| |||||    
T  50853999 attaagcagttaatgcatttactgtcaaacc 50854029  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 16184707 - 16184780
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtat 328  Q
    |||||| ||||||||||||||||||| ||| || |||||||| ||| || |||||||||||| |||||||||||    
T  16184707 ttaaaagtaagaatctttagatattcttttaattgtacaacttcctcgactgattgttattattcctagagtat 16184780  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 16184959 - 16185010
Alignment:
Q  333 cttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaac 384  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  16184959 cttcctaggctagtgcttactcattaagcattcaacgcatttattgtaaaac 16185010  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 13188115 - 13188169
Alignment:
Q  330 caacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaaac 384  Q
    ||||||| |||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  13188115 caacttcctaggctagtgcttactcattaaccattcaatgaaattattataaaac 13188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 34611880 - 34611993
Alignment:
Q  265 gaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcatt 364  Q
    |||||| ||| ||||||||| |  |||||||| |||   |||||||||| || ||  ||||||| |||| || |||| |||||||||  |||||||||||    
T  34611880 gaatctgtagttattcctttaaatgtacaacttcct---ttgattgttaatattcacagagtatacaacatcctaggttagtgcttatccattaagcatt 34611976  T
Q  365 caatgtatttattgtaa 381  Q
    || ||||||||||||||    
T  34611977 cagtgtatttattgtaa 34611993  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 13188078 - 13188125
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctag 302  Q
    ||||||||||| |||||||||||||||||| || |||||||| |||||    
T  13188078 ttaaaattaagtatctttagatattcctttaattgtacaacttcctag 13188125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 382
Target Start/End: Complemental strand, 32476765 - 32476643
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    |||||||||||||||||||||||||||||| |   || |||| ||||||||| ||||     ||||||  ||||  |||| |  ||||||||||| |||     
T  32476765 ttaaaattaagaatctttagatattcctttaactttataacttcctagattggttgt-----ctcctattgtataaaactcccaaggctagtgctcacta 32476671  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | || |||||||||| ||||||||||||    
T  32476670 aatatgcattcaatgcatttattgtaaa 32476643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 47366188 - 47366279
Alignment:
Q  290 tacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaa 381  Q
    ||||||| |||||||| ||||||| ||  | || | ||| ||||||| || | ||||||||| | ||||| |||||||||||||||||||||    
T  47366188 tacaacttcctagattaattgttaatatgcttaaaatatacaacttcctatgttagtgcttattgattaaccattcaatgtatttattgtaa 47366279  T

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Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 32755088 - 32754958
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||||||||||||||| |||||||||| | || ||| |||| ||||||||||||||||||||||||||||||| ||||||| | || |||||||||||     
T  32755088 ttaaaattaagaatcttcagatattcctctaattgtaaaacttcctagattgattgttattactcctagagtatacaacttccttgggtagtgcttacta 32754989  T
Q  355 attaagcattcaatgtatttattgtaaaacc 385  Q
    | |||||||||||| ||||||||||||||||    
T  32754988 aataagcattcaatttatttattgtaaaacc 32754958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 257 - 385
Target Start/End: Original strand, 37827844 - 37827972
Alignment:
Q  257 aaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcat 356  Q
    |||||||||||||||||||||||| ||| || |||||||| ||||||| ||||||||||||||||| | ||| ||||||| |||||||||||||||| ||    
T  37827844 aaaattaagaatctttagatattcatttaattgtacaacttcctagatcgattgttattactcctacaatatacaacttcctaggctagtgcttacttat 37827943  T
Q  357 taagcattcaatgtatttattgtaaaacc 385  Q
    |||||||| ||||  ||||||||||||||    
T  37827944 taagcattgaatgcttttattgtaaaacc 37827972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 46859737 - 46859617
Alignment:
Q  257 aaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactcat 356  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| ||||||  ||| |||||||| ||| ||    
T  46859737 aaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttgttactcctagagtatacaactttctagcctagtgctcactaat 46859638  T
Q  357 taagcattcaatgtatttatt 377  Q
    |||| ||||||||||||||||    
T  46859637 taaggattcaatgtatttatt 46859617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 382
Target Start/End: Complemental strand, 25104893 - 25104767
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| || |||||||| |||||||||||| | || ||||||||||||| ||||||| ||||||||||||||||     
T  25104893 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattat-ataactcctagagtattcaacttcctaggctagtgcttacta 25104795  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | ||||||||||||||||||||||||||    
T  25104794 aataagcattcaatgtatttattgtaaa 25104767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 45395797 - 45395923
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| || |||| ||| |||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||     
T  45395797 ttaaagttaagaatctttagatatccctttaattgtacgacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttacta 45395895  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | ||||||||||||||||||||||||||    
T  45395896 aataagcattcaatgtatttattgtaaa 45395923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 14613885 - 14614011
Alignment:
Q  255 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 354  Q
    ||||| |||||||||||||||||| ||||| || ||||||||   |||||||||||| || ||||||||||||| ||||||  |||||| |||||||||     
T  14613885 ttaaagttaagaatctttagatatccctttaattgtacaactttttagattgattgt-ataactcctagagtattcaactttctaggctggtgcttacta 14613983  T
Q  355 attaagcattcaatgtatttattgtaaa 382  Q
    | |||| ||| | |||||||||||||||    
T  14613984 aataagtatttagtgtatttattgtaaa 14614011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 1908252 - 1908318
Alignment:
Q  316 actcctagagtatgcaacttcataggctagtgcttactcattaagcattcaatgtatttattgtaaa 382  Q
    ||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  1908252 actcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaa 1908318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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