View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1315_low_7 (Length: 410)
Name: NF1315_low_7
Description: NF1315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1315_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 373
Target Start/End: Original strand, 25177864 - 25178196
Alignment:
| Q |
38 |
ataatatagtgaaaatgtaaacatcactataaccggttaccgaccccatcaattaacatcaaatatttatgtaagtataatatttacatccgtatcatgt |
137 |
Q |
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| T |
25177864 |
ataatatagtgaaaatgaaaacatcactataaccggttaccgaccccatcaattaacatcaaatatttatgtaagtataatatttacatccgtatcatgt |
25177963 |
T |
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| Q |
138 |
caaagacaatnnnnnnnnnnnnnnnnnnntgcattgcaaaattcaaagacttgtcctagtttatttcgatgattattcatgttaaacgttatgctaatat |
237 |
Q |
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| T |
25177964 |
caaagacaat-aaaaaaaaatccaaaaaatgcattgcaaaattcaaagaattatcctagtttatttcgatcattattcatgttaaacgttatgctaatat |
25178062 |
T |
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| Q |
238 |
ttctacacatcatttagttggaannnnnnnnnnnaattatgtagagaaatgtcatgtttgttttacctagattaagaacttaatgatattcttttttcca |
337 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25178063 |
ttctacacatcatttagttgga--ttttttttttaattatgtagagaaatgtcatgtttgttttacctagattaagaacttaatgatattcttttttcca |
25178160 |
T |
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| Q |
338 |
tcaaaactaacgataaaagaaattttgtaaacaaag |
373 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25178161 |
tcaaaactaacgataaaagaaattttgtaaacaaag |
25178196 |
T |
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