View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13160_high_2 (Length: 718)
Name: NF13160_high_2
Description: NF13160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13160_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 17 - 718
Target Start/End: Complemental strand, 836539 - 835866
Alignment:
| Q |
17 |
aaatatagtgcggtattttctaaagtagtaaagatcctgtgcaatattgcacgattgcgaaaaaacaaagtgacataaaatagtaaatatcacgtacaat |
116 |
Q |
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| T |
836539 |
aaatatagtgcggtatttactaaagtagtaaagatcatgtgcaatattgcacgattgcgaaaaaacaaagtgacataaaatagtaaatatcacgtacaat |
836440 |
T |
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| Q |
117 |
tctgttaaacttaatgtctttctgtgcgttcgaattcgctgtccttcgattttctaaagttacttcaattttctgaagttaccataaaaagtctgagggt |
216 |
Q |
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| T |
836439 |
tctgttaaacttaatgtctttctgtgcgttcgaattcgctgtccttcaattttctaaagttact----------gaagttaccataaaaagtctgagggt |
836350 |
T |
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| Q |
217 |
actcgtctttgatgtgaaacgacgatccatgtctagtctttaaaactggattaggtttggattgaacacttccagccttctttacttgtgtttctgaatt |
316 |
Q |
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| T |
836349 |
actcgtctttgatgtgaaacgacgattcatgtctagtctttaaaactggattaggtttggattgaacacttccagccttctttacttgtgtttctgaatt |
836250 |
T |
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| Q |
317 |
tctatccggtttatttagacgggaatcggaaagtgacttgattcccactagctcaggatcaggtggatacttgtatggtatttttctctcattcatcttt |
416 |
Q |
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| T |
836249 |
cctatccggtttatttagatgggaatcggaaagtgacttgattcccactagctcaggatcaggtggatacttgtatggtaattttctctcatccatcttt |
836150 |
T |
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| Q |
417 |
ctaaatgtaatagaaatccttcagcaaaagacaagtattaaataaaaatcatacattaaaacaaaaaagtattttcaagtgtatttgatattattgtatt |
516 |
Q |
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| T |
836149 |
ctaaatgtaatagaaatcctgcagcaaaagacaagtat------------------taaaacaaaaaagtattttcaagtgtatttgatattatggtatt |
836068 |
T |
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| Q |
517 |
taaagtacctttttgacgacacagatggaatacaatgtttagcaatatctgctccattaccattcaaaacgaacactgacctgcatgatcaaaactaact |
616 |
Q |
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| T |
836067 |
taaagtacctttttgacgacacagatggaatacaatgtttagcaatatctgctccattaccattcaaaacgaatactgacctgcatgatcaaaactaact |
835968 |
T |
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| Q |
617 |
aatatcaggtttctaagcaagaaatacatagggaattaaaataaaggtcatgatccaaatttgattcatgagaagtcacaagaaaatggaaaataagtag |
716 |
Q |
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| T |
835967 |
aatatcaggtttctaagcaagaaatacatagggaattaaaataaaggtcatgatccaaatttgattcatgagaagtcacaagaaaatggaaaataagtag |
835868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 359 - 669
Target Start/End: Complemental strand, 814492 - 814179
Alignment:
| Q |
359 |
tcccactagctcaggatcaggtggatacttgtatggtatttttctctcattcatctttctaaatgtaatagaaatcctt--cagcaaaagac-aagtatt |
455 |
Q |
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| T |
814492 |
tcccactagatcatgatcaggtgaataagtgtatggtaactttctcttatccatctttctaaatgtaatagaaatcctatacagcaaaagaataattatt |
814393 |
T |
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| Q |
456 |
aaataaaaatcatacattaaaacaaaaaagtattttcaagtgtatttgatattattg-tatttaaagtacctttttgacgacacagatggaatacaatgt |
554 |
Q |
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| T |
814392 |
agataaaagtaatacaataaaacatgataggattttcaagtgaatacaaaatttgtggtatttgaaatacctttttgataacactgatggaatgcagtgt |
814293 |
T |
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| Q |
555 |
ttagcaatatctgctccattaccattcaaaacgaacactgacctgcatgatcaaaactaactaatatcaggtttctaagcaagaaatacatagggaatta |
654 |
Q |
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| T |
814292 |
ttagcgatgtctgcaccattacccttcaagacaaacactgacctgcatgatcaaaa-tgagtactatcaagtttctaaacaacaaatacatgggaaaaat |
814194 |
T |
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| Q |
655 |
aaataaaggtcatga |
669 |
Q |
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| T |
814193 |
aaataaaggtcatga |
814179 |
T |
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