View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13160_low_1 (Length: 861)
Name: NF13160_low_1
Description: NF13160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13160_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 570 - 855
Target Start/End: Complemental strand, 6380866 - 6380581
Alignment:
| Q |
570 |
tgctcattacttaaacctgtcaacccgcttgcgtctgcatttgtcacgaccgggcttccttcatttgtttggacaacatttgcatgcacaattgtgcttc |
669 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| | | ||||||||||| |
|
|
| T |
6380866 |
tgctcactacttaaacctgtcaacccgcttgcatctgcatttgtcacgaccgggcctccttcatttgtttggacagcatttgcacgaataattgtgcttc |
6380767 |
T |
|
| Q |
670 |
tcccacgtccttgattagaagctctggtttgttgctgtccttttcctcgacctgcacccatcttagtttcatttcgtggcctatctccccaccaatcagg |
769 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6380766 |
tcccacgtccttgattagaacctctggtttgttgttgtccttttcctcgacctgcacccatcttagtttcatttcgtggcctatctccccaccaatcagg |
6380667 |
T |
|
| Q |
770 |
gtatccaactacctgaaaacagcttaatgcatcatgtcctgttcgattgcagtatgaacatactgaattcttctccttcatctcac |
855 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
6380666 |
gtatccaactacctgaaaacagcttaatgcatcatgtcctgttcgattgcagtatgaacataccgcattcttctccttcatatcac |
6380581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 570 - 855
Target Start/End: Original strand, 1620887 - 1621172
Alignment:
| Q |
570 |
tgctcattacttaaacctgtcaacccgcttgcgtctgcatttgtcacgaccgggcttccttcatttgtttggacaacatttgcatgcacaattgtgcttc |
669 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| | | ||||||||||| |
|
|
| T |
1620887 |
tgctcactacttaaacctgtcaacccgcttgcatctgcatttgtcacgaccgggcctccttcatttgtttggacagcatttgcacgaataattgtgcttc |
1620986 |
T |
|
| Q |
670 |
tcccacgtccttgattagaagctctggtttgttgctgtccttttcctcgacctgcacccatcttagtttcatttcgtggcctatctccccaccaatcagg |
769 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1620987 |
tcccacgtccttgattagaacctctggtttgttgttgtccttttcctcgacctgcacccatcttagtttcatttcgtggcctatctccccaccaatcagg |
1621086 |
T |
|
| Q |
770 |
gtatccaactacctgaaaacagcttaatgcatcatgtcctgttcgattgcagtatgaacatactgaattcttctccttcatctcac |
855 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
1621087 |
gtatccaactacctgaaaacagcttaatgcatcatgtcctgttcgattgcagtatgaacataccgcattcttctccttcatatcac |
1621172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 8029863 - 8029829
Alignment:
| Q |
57 |
gttcttggtgattatatttaggtttgttgttcctt |
91 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
8029863 |
gttcatggtgattatatttaggtttgttgttcctt |
8029829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University