View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13160_low_3 (Length: 458)
Name: NF13160_low_3
Description: NF13160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13160_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Complemental strand, 46766202 - 46765765
Alignment:
| Q |
10 |
aacaatattataaagaaaagcttgggacccccttttggggcagggtcatgtttgcttagggtcctgcacatagnnnnnnnnnnnnctatttgtatgttgt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46766202 |
aacaatattataaagaaaagcttgggacccc-ttttggggcagggtcatgtttgcttagggtcctgcacatagttttttgtttttctatttgtatgttgt |
46766104 |
T |
|
| Q |
110 |
atttgaatgagcttatnnnnnnnnnnnnnn-gtacaaacactaagttgcttaatttccactatcttaaaatcatgattatgagagtctataagggataga |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46766103 |
atttgaatgagcttataaaaagaaaaaaaaagtacaaacactaagttgcttaatttccactatcttaaaatcatgattatgagagtctataagggataga |
46766004 |
T |
|
| Q |
209 |
aaaggtacttgaatatggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46766003 |
aaaggtacttgaatatggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgt |
46765904 |
T |
|
| Q |
309 |
ccaactcaattcttgactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46765903 |
ccaactcaattcttgactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtc |
46765804 |
T |
|
| Q |
409 |
tgaaaatcttgattcaccgcgaacataagacaattgatg |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46765803 |
tgaaaatcttgattcaccgcgaacataagacaattgatg |
46765765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 259 - 438
Target Start/End: Complemental strand, 1086291 - 1086112
Alignment:
| Q |
259 |
ttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtccaactcaattcttgactgagaacaactcatacttttcttcaattttccg |
358 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||| |||||||| |||| | ||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
1086291 |
ttagaaaaagtttagctcagtgtatccgtgagaatatggtaaaagttcctccacttggattctggaacgagaacagctcatacttttcttcaattttcca |
1086192 |
T |
|
| Q |
359 |
tgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctgaaaatcttgattcaccgcgaacataaga |
438 |
Q |
| |
|
|| |||||||||||| |||||||||| ||||||||| |||| ||||||||||||||| ||||| ||||| || ||||| |
|
|
| T |
1086191 |
tggtttgactcaacctcggcccaaaataagccataaaccggtctgtggtctgaaaatctcgattctccgcgtacgtaaga |
1086112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University