View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13160_low_4 (Length: 439)

Name: NF13160_low_4
Description: NF13160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13160_low_4
NF13160_low_4
[»] chr3 (9 HSPs)
chr3 (26-252)||(51056559-51056785)
chr3 (76-187)||(38258950-38259061)
chr3 (162-249)||(25498946-25499033)
chr3 (330-426)||(25498767-25498864)
chr3 (333-417)||(38258762-38258847)
chr3 (330-417)||(49358515-49358603)
chr3 (184-241)||(49358685-49358743)
chr3 (106-156)||(51485079-51485129)
chr3 (373-406)||(17113764-17113797)
[»] chr4 (16 HSPs)
chr4 (34-241)||(50589695-50589902)
chr4 (73-252)||(14792338-14792517)
chr4 (42-249)||(51407069-51407283)
chr4 (161-252)||(12888347-12888438)
chr4 (330-426)||(12888172-12888269)
chr4 (338-426)||(23533284-23533373)
chr4 (338-422)||(50589512-50589597)
chr4 (174-249)||(18357200-18357274)
chr4 (174-249)||(18431533-18431607)
chr4 (330-426)||(14792163-14792260)
chr4 (330-411)||(18357037-18357119)
chr4 (330-411)||(18431688-18431770)
chr4 (330-426)||(51407364-51407459)
chr4 (337-417)||(3915253-3915334)
chr4 (378-426)||(8817560-8817608)
chr4 (333-394)||(3926263-3926325)
[»] chr7 (10 HSPs)
chr7 (34-242)||(47589146-47589354)
chr7 (81-252)||(15121290-15121461)
chr7 (330-426)||(5892979-5893076)
chr7 (161-252)||(26199886-26199980)
chr7 (173-243)||(36934343-36934413)
chr7 (161-233)||(5892812-5892884)
chr7 (330-426)||(26199711-26199808)
chr7 (330-428)||(36934168-36934267)
chr7 (341-417)||(40074342-40074419)
chr7 (330-426)||(15121539-15121634)
[»] chr5 (7 HSPs)
chr5 (26-252)||(33758270-33758497)
chr5 (81-252)||(9436521-9436692)
chr5 (161-252)||(27632084-27632175)
chr5 (163-253)||(36607762-36607852)
chr5 (330-417)||(9436355-9436443)
chr5 (330-428)||(33758095-33758192)
chr5 (387-426)||(36607987-36608026)
[»] chr1 (10 HSPs)
chr1 (73-237)||(36057627-36057791)
chr1 (73-237)||(36058755-36058919)
chr1 (54-211)||(27109901-27110058)
chr1 (161-242)||(32946801-32946882)
chr1 (104-241)||(15115465-15115603)
chr1 (104-241)||(15139981-15140119)
chr1 (104-234)||(15123675-15123806)
chr1 (104-234)||(15147863-15147994)
chr1 (330-426)||(27109777-27109874)
chr1 (330-363)||(32946970-32947003)
[»] scaffold0005 (2 HSPs)
scaffold0005 (73-252)||(47214-47393)
scaffold0005 (330-426)||(47471-47568)
[»] chr2 (4 HSPs)
chr2 (34-252)||(5051490-5051703)
chr2 (163-252)||(36593006-36593095)
chr2 (330-426)||(36592831-36592928)
chr2 (330-406)||(5051335-5051412)
[»] chr8 (6 HSPs)
chr8 (161-252)||(20519119-20519210)
chr8 (163-252)||(38149387-38149476)
chr8 (163-252)||(32919386-32919476)
chr8 (342-414)||(38149566-38149639)
chr8 (330-414)||(32919544-32919630)
chr8 (330-394)||(20518976-20519041)
[»] chr6 (5 HSPs)
chr6 (161-252)||(22696648-22696739)
chr6 (161-252)||(34502877-34502968)
chr6 (330-426)||(22696473-22696570)
chr6 (169-241)||(13032436-13032507)
chr6 (330-417)||(34503046-34503134)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 51056559 - 51056785
Alignment:
Q  26 tttcaatctgtcccatatctgtgtgtaggaagcgattgtggtgtgacgtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatag 125  Q
    |||| |||||||||| |||||| |||| |||| ||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |    
T  51056559 tttctatctgtcccagatctgtctgtaagaagtgatggtggtgttacgtggtgacggtggtgaggtaagtctcagttttggtggtaagaggaggtgatgg 51056658  T
Q  126 tggtggttttggtactgtaactgcgacggtgttggtttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtg 225  Q
    |||| ||||||||| |||| ||||||| |||||| ||||||||||   |||||||||||||||| ||||||||  ||||||||||||||||||||||||     
T  51056659 tggtcgttttggtattgtagctgcgacagtgttgttttcttccttacaggtgctgagtttgcggttgttagaacaacacaggttgtctggtgtttttgta 51056758  T
Q  226 tggtggttgtttccttcccatccagat 252  Q
    |||||||||||||||||  ||||||||    
T  51056759 tggtggttgtttccttctgatccagat 51056785  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 38259061 - 38258950
Alignment:
Q  76 gtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttggtttcttccttgtggg 175  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||| || |||||  ||||||| ||||||||||| |||    
T  38259061 gtgacggtggtgaggtaagtctcggtgttggtggtaagaggaggtgattgtggtggttttggtactttagctgcggtggtgttgttttcttccttgcggg 38258962  T
Q  176 tgctgagtttgc 187  Q
    | ||||||||||    
T  38258961 tactgagtttgc 38258950  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 25499033 - 25498946
Alignment:
Q  162 ttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatcca 249  Q
    |||||||||| || || ||||||||||||||||||||| ||||| ||| |||||||||| || ||||||||||||||||||| |||||    
T  25499033 ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctggtgtttatgcgtggtggttgtttccttccgatcca 25498946  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 25498864 - 25498767
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||||| ||| ||||||||||| |||  |||| | |||||||| |||| | |||||||||||||||||||||||| ||||| ||||||||    
T  25498864 tcttcaacggttggtttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgttgtga 25498767  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 38258847 - 38258762
Alignment:
Q  333 tcaacggttgggttcaatcagaaccttctcactcgg-tcaactactctgttatttggtggtttgtcgatgtggattgatggtgttg 417  Q
    ||||||||||||||| |||||||||||||||  ||| || ||||| || |||| |||||||||||| |||||| | ||||||||||    
T  38258847 tcaacggttgggttcgatcagaaccttctcatccggttcgactaccctattatctggtggtttgtctatgtgggtcgatggtgttg 38258762  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 49358603 - 49358515
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctca-ctcggtcaactactctgttatttggtggtttgtcgatgtggattgatggtgttg 417  Q
    |||||||  ||||||||| ||||||||||||||  ||   || ||||||||||||| |||||| |||||||| ||||||||||||||||    
T  49358603 tcttcaatagttgggttcgatcagaaccttctcgtctgattcgactactctgttatctggtggattgtcgatatggattgatggtgttg 49358515  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 49358743 - 49358685
Alignment:
Q  184 ttgcggctgttagaaata-cacaggttgtctggtgtttttgtgtggtggttgtttcctt 241  Q
    |||||| ||||||||| | |||| ||||||| |||||||||||||||||||||||||||    
T  49358743 ttgcgggtgttagaaaaagcacaagttgtctagtgtttttgtgtggtggttgtttcctt 49358685  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 51485129 - 51485079
Alignment:
Q  106 gtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtg 156  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||| |||||    
T  51485129 gtggtaagaggaggtgatggtggtggttttggtattgtagctgcggcggtg 51485079  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 17113764 - 17113797
Alignment:
Q  373 ctactctgttatttggtggtttgtcgatgtggat 406  Q
    |||||||||||| |||||||||||||||||||||    
T  17113764 ctactctgttatctggtggtttgtcgatgtggat 17113797  T

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Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 34 - 241
Target Start/End: Complemental strand, 50589902 - 50589695
Alignment:
Q  34 tgtcccatatctgtgtgtaggaagcgattgtggtgtgacgtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggtt 133  Q
    ||||||||||||||||| |||||||||| ||||||||| | ||||||||||||||| |||||||| |||||| ||||||||||||||||| |||||||||    
T  50589902 tgtcccatatctgtgtgaaggaagcgatggtggtgtgatgcggtgacggtggtgaggtaagtctcggttttgatggtaagaggaggtgatggtggtggtt 50589803  T
Q  134 ttggtactgtaactgcgacggtgttggtttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggtt 233  Q
    | |||||||||  ||||||| ||||| |||||||| ||  ||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||    
T  50589802 taggtactgtagttgcgacgatgttgttttcttccatgcaggtgctgagtttgcgactgttagaaatacacatgttgtttggtgtttatgtgtggtggtt 50589703  T
Q  234 gtttcctt 241  Q
    ||||||||    
T  50589702 gtttcctt 50589695  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 73 - 252
Target Start/End: Complemental strand, 14792517 - 14792338
Alignment:
Q  73 gtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttggtttcttccttgt 172  Q
    ||||||| ||||| ||| |||||||| || ||||||||||||||| ||||| |||||||||||||||||||| | ||| || || || |||||||||||     
T  14792517 gtggtgatggtggcgaggtaagtctcggtcttggtggtaagaggatgtgatggtggtggttttggtactgtagccgcggcgatgatgttttcttccttgc 14792418  T
Q  173 gggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||  || ||||||||||||||||||||  ||||||||    
T  14792417 gggtgctgagtttgcgactgttagaaaaacacaggttgcctggtgaattcgtgtggtggttgtttccttctgatccagat 14792338  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 42 - 249
Target Start/End: Original strand, 51407069 - 51407283
Alignment:
Q  42 atctgtgtgtaggaagcgattgtggtgtgacgtggtgacggtggtga-----gt-taagtctctgttttggtggtaagaggaggtgatagtggtggtttt 135  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||||||     || ||||||||  |||||||||||||||||||||||  |||| |||||    
T  51407069 atctgtgtggaggaagtgatggtggtgtgacgtggtgacggtggtgatggcggtgtaagtctcgattttggtggtaagaggaggtgatgatggtagtttt 51407168  T
Q  136 ggtactg-taactgcgacggtgttggtttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttg 234  Q
    ||||||| ||  |||   || | || |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||    
T  51407169 ggtactgctagttgcagtggggctgttttctttcttgtgggtgctgagtttgcggttgttagaaaaacacaggttgtctggtgttttagtgtggtggatg 51407268  T
Q  235 tttccttcccatcca 249  Q
    ||||||||| |||||    
T  51407269 tttccttccgatcca 51407283  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 12888438 - 12888347
Alignment:
Q  161 tttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  12888438 tttcttccttgcgggtgctgagtttgcggctgttagtaaaacacaggttgtctggtgtttttgtgcggtggttgtttccttctgatccagat 12888347  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 12888269 - 12888172
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||||||||| |||||| ||||||||  || | | ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  12888269 tcttcaacggttgggttcgatcagatccttctcatccgattcgactactctgttatctggtggtttgtcgatgtggatcgatggtgttgctgttgtga 12888172  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 23533373 - 23533284
Alignment:
Q  338 ggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||| ||| |||| ||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  23533373 ggttggattcgatcataaccttctcacccggttcaagtactctgttatctggtggtttgtcgatgtggattgatggtgttgctgttgtga 23533284  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 50589597 - 50589512
Alignment:
Q  338 ggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgtt 422  Q
    |||||||||| |||| ||||||| ||| |||| | ||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  50589597 ggttgggttcgatcaaaaccttcccacccggttcgactgctctgttatctggtagtttgtcgatgtggattgatggtgttgttgtt 50589512  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 18357274 - 18357200
Alignment:
Q  174 ggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatcca 249  Q
    |||||||||||||| |||||||| || | ||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  18357274 ggtgctgagtttgcagctgttaggaaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatcca 18357200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 18431533 - 18431607
Alignment:
Q  174 ggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatcca 249  Q
    |||||||||||||| |||||||| || | ||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  18431533 ggtgctgagtttgcagctgttaggaaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatcca 18431607  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 14792260 - 14792163
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||||||||| |||| |||  |||||  |||| | ||||||||||||| |||||| |||||||||||||| |||||||||| || |||||    
T  14792260 tcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcgatgtggatcgatggtgttgctgctgtga 14792163  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 411
Target Start/End: Complemental strand, 18357119 - 18357037
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcgg-tcaactactctgttatttggtggtttgtcgatgtggattgatg 411  Q
    |||||||||||||||||| ||||||| |||||||  ||| || ||||||||||||| | ||| ||||||||||||||| ||||    
T  18357119 tcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgtggatcgatg 18357037  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 411
Target Start/End: Original strand, 18431688 - 18431770
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcgg-tcaactactctgttatttggtggtttgtcgatgtggattgatg 411  Q
    |||||||||||||||||| ||||||| |||||||  ||| || ||||||||||||| | ||| ||||||||||||||| ||||    
T  18431688 tcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgtggatcgatg 18431770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 426
Target Start/End: Original strand, 51407364 - 51407459
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctca-ctcggtcaactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||||||||| ||||||||||||||| |  | |  ||||  ||||||| || ||||||||||| |||||| |||||||||| ||||||||    
T  51407364 tcttcaacggttgggttcgatcagaaccttctcatccagttggacta--ctgttatctgatggtttgtcgaagtggatcgatggtgttgctgttgtga 51407459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 3915334 - 3915253
Alignment:
Q  337 cggttgggttcaatcagaaccttctca-ctcggtcaactactctgttatttggtggtttgtcgatgtggattgatggtgttg 417  Q
    ||||||||||| || |||||||||||| || | || |||| |||||||| ||||||||| |||| |||||| ||||||||||    
T  3915334 cggttgggttcgattagaaccttctcatctggttcgactattctgttatctggtggtttatcgacgtggatcgatggtgttg 3915253  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 8817608 - 8817560
Alignment:
Q  378 ctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    ||||||| | ||||||||||||||||||| |||||||||| ||||||||    
T  8817608 ctgttatctagtggtttgtcgatgtggatcgatggtgttgctgttgtga 8817560  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 3926325 - 3926263
Alignment:
Q  333 tcaacggttgggttcaatcagaaccttctcactcgg-tcaactactctgttatttggtggttt 394  Q
    |||| |||||||||| |||||||||||||||  ||| || ||||||||||||| |||||||||    
T  3926325 tcaatggttgggttcgatcagaaccttctcatccggttcgactactctgttatctggtggttt 3926263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 47589354 - 47589146
Alignment:
Q  34 tgtcccatatctgtgtgtaggaagcgattgtggtgtgacgtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggtt 133  Q
    ||||||| ||||||||| |||||| ||| |||||| || ||||| ||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||    
T  47589354 tgtcccagatctgtgtggaggaagtgatggtggtgcgaggtggtcacggtggtgaggtaagtctcggttttggtggtaagaagaggtgatggtggtggtt 47589255  T
Q  134 ttggtactgtaactgcgacggtgttggtttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggtt 233  Q
    |||||||||||  |||| ||||| || ||||||||| ||||||  |||||||||| || ||||||| ||||||||||| |||||||||||||||||||      
T  47589254 ttggtactgtagttgcggcggtgctgttttcttcctcgtgggtattgagtttgcgacttttagaaaaacacaggttgtttggtgtttttgtgtggtggac 47589155  T
Q  234 gtttccttc 242  Q
    |||||||||    
T  47589154 gtttccttc 47589146  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 15121290 - 15121461
Alignment:
Q  81 ggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttggtttcttccttgtgggtgctg 180  Q
    ||||||||| |||||||   |||||| |||||||||||||| | |||||||||||| ||| |||  |||| |||||||||||||||||||| ||||||||    
T  15121290 ggtggtgaggtaagtctagcttttggaggtaagaggaggtgttggtggtggttttgatacggtagttgcggcggtgttggtttcttccttgcgggtgctg 15121389  T
Q  181 agtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||| ||||||| ||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  15121390 agtttgcggctcttagaaaaacataggttgtctggtgcttttgtgtggtggatgtttccttccgatccagat 15121461  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 330 - 426
Target Start/End: Original strand, 5892979 - 5893076
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    ||||||||||||||||||||||||||||||||||  |||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5892979 tcttcaacggttgggttcaatcagaaccttctcatccggttcgattactctgttatctggtggtttgtcgatgtggattgatggtgttgttgttgtga 5893076  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 26199980 - 26199886
Alignment:
Q  161 tttcttccttgtgggtgctgagtttgcggctgttagaaatacacag---gttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||   |||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||| ||||||||    
T  26199980 tttcttccttcctggtgctgagtttgcggctgttagaaaaacacagttggttgtctggtgtttttgtgtggtggttgtttccttccgatccagat 26199886  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 36934413 - 36934343
Alignment:
Q  173 gggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcc 243  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  36934413 gggtgctgagtttgcggctgttagaaaaacacagtttgtctggtgtttttgtgtggtggatgtttccttcc 36934343  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 5892812 - 5892884
Alignment:
Q  161 tttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggtt 233  Q
    ||||||||||| || |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  5892812 tttcttccttgcggatgctgagtttgcggctattagaaaaacacaggttgtctggtgtttttgtgtggtggtt 5892884  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 26199808 - 26199711
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    ||||||| |||||||||| ||||| |||||||||   ||| | |||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  26199808 tcttcaatggttgggttcgatcagtaccttctcatcaggttcgactactctattatttggtggtttgtcgatgtgtatcgatggtgttgttgttgtga 26199711  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 36934267 - 36934168
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctca-ctcggtcaactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtgatg 428  Q
    |||||||||||||||||| ||||||||||||||| || | || |||||||| |||| |||||||||| |  |||||||||||| ||||| || |||||||    
T  36934267 tcttcaacggttgggttcgatcagaaccttctcatctggttcgactactctattatctggtggtttgccagtgtggattgatgatgttgctgctgtgatg 36934168  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 417
Target Start/End: Original strand, 40074342 - 40074419
Alignment:
Q  341 tgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttg 417  Q
    ||||||| |||||||||||||||  |||| | |||||| |||||| |||||||||||||| |||||| ||||||||||    
T  40074342 tgggttcgatcagaaccttctcatccggttcgactactatgttatctggtggtttgtcgaggtggatcgatggtgttg 40074419  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 426
Target Start/End: Original strand, 15121539 - 15121634
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctca-ctcggtcaactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||||| ||| ||||||||||||||| || | || |||||||||||||||| |||| ||||  ||||| | |||||||||| || |||||    
T  15121539 tcttcaacggttgg-ttcgatcagaaccttctcatctggttcgactactctgttatttgttggtatgtcagtgtgg-tcgatggtgttgctgctgtga 15121634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 33758497 - 33758270
Alignment:
Q  26 tttcaatctgtcccatatctgtgtgtaggaagcgattgtggtgtgacgtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatag 125  Q
    |||| |||||| ||| || |||||| |||||| ||| ||||||||||||||||| || |||||| ||||||||   ||||||||||||||||||||||      
T  33758497 tttcgatctgttccagatttgtgtggaggaagtgatggtggtgtgacgtggtgatggcggtgagataagtctcgactttggtggtaagaggaggtgatga 33758398  T
Q  126 tggtggttttggtactgtaa-ctgcgacggtgttggtttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgt 224  Q
    |||| ||||||||||||| | ||||   |||| || |||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||    
T  33758397 tggtagttttggtactgttagctgcagtggtgctgttttctttcttgtgggtactgagtttgcggccgttagaaaaacacaggttgtctggtgttttagt 33758298  T
Q  225 gtggtggttgtttccttcccatccagat 252  Q
    ||||||| ||||||||||| ||||||||    
T  33758297 gtggtggatgtttccttccgatccagat 33758270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 81 - 252
Target Start/End: Complemental strand, 9436692 - 9436521
Alignment:
Q  81 ggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttggtttcttccttgtgggtgctg 180  Q
    ||||||||| ||||||| |||||||| |||||||||||||| | | ||||||||||||||  ||  || |  ||||||| ||||||||||| ||||||||    
T  9436692 ggtggtgaggtaagtctttgttttggaggtaagaggaggtgttggcggtggttttggtacaatagttgtggtggtgttgctttcttccttgcgggtgctg 9436593  T
Q  181 agtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||| ||||||| ||||| ||| ||| ||||||||||||||||  ||||||||||| ||||||||    
T  9436592 agtttgcggctcttagaaaaacacatgttttctagtgtttttgtgtggtgtatgtttccttccgatccagat 9436521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 27632084 - 27632175
Alignment:
Q  161 tttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    |||||| |||| |||||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  27632084 tttctttcttgcgggtgctgagtttgcggctgttagaaaagcacaagttgtttggtgtttttgtgtggtggttgtttccttccgatccagat 27632175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 36607762 - 36607852
Alignment:
Q  163 tcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagatt 253  Q
    ||||||||| ||||   ||||||| |||||||||||| |||||||||||||| ||||||||  |||||||||||||||||| |||||||||    
T  36607762 tcttccttgcgggtatggagtttgtggctgttagaaaaacacaggttgtctgatgtttttgcttggtggttgtttccttccaatccagatt 36607852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 9436443 - 9436355
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctca-ctcggtcaactactctgttatttggtggtttgtcgatgtggattgatggtgttg 417  Q
    |||||||||| || ||||||||| |||||||||| || | || | ||||||||||| | ||||||||||||||||||| ||||||||||    
T  9436443 tcttcaacggctgagttcaatcaaaaccttctcatctggttcgattactctgttatctagtggtttgtcgatgtggatcgatggtgttg 9436355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 33758192 - 33758095
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtgatg 428  Q
    |||||||||||||||||| |||||||||||||||  | || | ||||||  ||||| || |||||||||||||||||| ||||||||||  |||||||||    
T  33758192 tcttcaacggttgggttcgatcagaaccttctcatccagttcgactact--gttatctgatggtttgtcgatgtggatcgatggtgttgccgttgtgatg 33758095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 36607987 - 36608026
Alignment:
Q  387 ggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  36607987 ggtggtttgtcgatgtggatcgatggtgttgttgttgtga 36608026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 36057627 - 36057791
Alignment:
Q  73 gtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttggtttcttccttgt 172  Q
    ||||||| ||| ||||| ||||||||  |||||||||||||| |||||||| ||||| ||||||||| |||| ||||| ||||| || ||||||||||||    
T  36057627 gtggtgatggttgtgaggtaagtctcgattttggtggtaagatgaggtgatggtggttgttttggtattgtagctgcggcggtgctgttttcttccttgt 36057726  T
Q  173 gggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgttt 237  Q
    || |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  36057727 ggatgctgagtttgcggctgttagaaaaacacaagttgtctggtgtttttgtgtgatggttgttt 36057791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 36058755 - 36058919
Alignment:
Q  73 gtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttggtttcttccttgt 172  Q
    ||||||| ||| ||||| ||||||||  |||||||||||||| |||||||| ||||| ||||||||| |||| ||||| ||||| || ||||||||||||    
T  36058755 gtggtgatggttgtgaggtaagtctcgattttggtggtaagatgaggtgatggtggttgttttggtattgtagctgcggcggtgctgttttcttccttgt 36058854  T
Q  173 gggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgttt 237  Q
    || |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  36058855 ggatgctgagtttgcggctgttagaaaaacacaagttgtctggtgtttttgtgtgatggttgttt 36058919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 27110058 - 27109901
Alignment:
Q  54 gaagcgattgtggtgtgacgtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacg 153  Q
    |||| ||| |||||||||| |||||| ||||||||| ||||| || |||||||||||||||||||||||| |||||||||||| || |||| ||||| ||    
T  27110058 gaagtgatggtggtgtgacctggtgatggtggtgaggtaagtttcggttttggtggtaagaggaggtgatggtggtggttttgatattgtagctgcggcg 27109959  T
Q  154 gtgttggtttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgt 211  Q
    ||| |  |||||||||||||| ||||||||||||| |||||||||| |||||||||||    
T  27109958 gtgctattttcttccttgtggttgctgagtttgcgcctgttagaaaaacacaggttgt 27109901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 32946801 - 32946882
Alignment:
Q  161 tttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttc 242  Q
    ||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32946801 tttcttccttgcgggtgctaagtttgcagctgttagaaaaacacaggttgtctggtgtttttgtgtggtggttgtttccttc 32946882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 15115465 - 15115603
Alignment:
Q  104 tggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttg-gttt-cttccttgtgggtgctgagtttgcggctgttagaaata 201  Q
    |||||||||||||||||||||||||||||||||||| ||||  |||| ||||| || |||| |    |||||||||||||||||| || ||||||||| |    
T  15115465 tggtggtaagaggaggtgatagtggtggttttggtattgtagttgcggcggtgctgagtttgcgagtttgtgggtgctgagtttgtggatgttagaaaaa 15115564  T
Q  202 cacaggttgtctggtgtttttgtgtggtggttgtttcctt 241  Q
    || | | ||| |||||||||||||||||||||| ||||||    
T  15115565 cataag-tgtttggtgtttttgtgtggtggttgattcctt 15115603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 15139981 - 15140119
Alignment:
Q  104 tggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttg-gttt-cttccttgtgggtgctgagtttgcggctgttagaaata 201  Q
    |||||||||||||||||||||||||||||||||||| ||||  |||| ||||| || |||| |    |||||||||||||||||| || ||||||||| |    
T  15139981 tggtggtaagaggaggtgatagtggtggttttggtattgtagttgcggcggtgctgagtttgcgagtttgtgggtgctgagtttgtggatgttagaaaaa 15140080  T
Q  202 cacaggttgtctggtgtttttgtgtggtggttgtttcctt 241  Q
    || | | ||| |||||||||||||||||||||| ||||||    
T  15140081 cataag-tgtttggtgtttttgtgtggtggttgattcctt 15140119  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 15123675 - 15123806
Alignment:
Q  104 tggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgtt--ggtttcttccttgtgggtgctgagtttgcggctgttagaaata 201  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |  | || |    |||||||||||||||||| || ||||||||| |    
T  15123675 tggtggtaagaggaggtgatagtggtggttttggtattgtagctgcggcggtgctcagtttgcgagtttgtgggtgctgagtttgtggatgttagaaaaa 15123774  T
Q  202 cacaggttgtctggtgtttttgtgtggtggttg 234  Q
    || | | ||| ||||||||||||||||||||||    
T  15123775 cataag-tgtttggtgtttttgtgtggtggttg 15123806  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 15147863 - 15147994
Alignment:
Q  104 tggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgtt--ggtttcttccttgtgggtgctgagtttgcggctgttagaaata 201  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |  | || |    |||||||||||||||||| || ||||||||| |    
T  15147863 tggtggtaagaggaggtgatagtggtggttttggtattgtagctgcggcggtgctcagtttgcgagtttgtgggtgctgagtttgtggatgttagaaaaa 15147962  T
Q  202 cacaggttgtctggtgtttttgtgtggtggttg 234  Q
    || | | ||| ||||||||||||||||||||||    
T  15147963 cataag-tgtttggtgtttttgtgtggtggttg 15147994  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 27109874 - 27109777
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||| ||||| |||||||| ||||||  |||| | ||||||||||||| ||||||||||||||||||||| |||||||||| || |||||    
T  27109874 tcttcaacggtttggttcgatcagaacattctcatccggttcgactactctgttatctggtggtttgtcgatgtggatcgatggtgttgctgctgtga 27109777  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 32946970 - 32947003
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctca 363  Q
    |||||||||||||||||| |||||||||||||||    
T  32946970 tcttcaacggttgggttcgatcagaaccttctca 32947003  T

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Target: scaffold0005 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 73 - 252
Target Start/End: Original strand, 47214 - 47393
Alignment:
Q  73 gtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggttttggtactgtaactgcgacggtgttggtttcttccttgt 172  Q
    ||||||| ||||| ||| |||||||| || ||||||||||||||| ||||| |||||||||||||||||||| | ||| || || || |||||||||||     
T  47214 gtggtgatggtggcgaggtaagtctcggtcttggtggtaagaggatgtgatggtggtggttttggtactgtagccgcggcgatgatgttttcttccttgc 47313  T
Q  173 gggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||  || ||||||||||||||||||||  ||||||||    
T  47314 gggtgctgagtttgcgactgttagaaaaacacaggttgcctggtgaattcgtgtggtggttgtttccttctgatccagat 47393  T

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Target: scaffold0005; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 426
Target Start/End: Original strand, 47471 - 47568
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||||||||| |||| |||  |||||  |||| | ||||||||||||| |||||| |||||||||||||| |||||||||| || |||||    
T  47471 tcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcgatgtggatcgatggtgttgctgctgtga 47568  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 5051703 - 5051490
Alignment:
Q  34 tgtcccatatctgtgtgtaggaagcgattgtggtgtgacgtggtgacggtggtgagttaagtctctgttttggtggtaagaggaggtgatagtggtggtt 133  Q
    ||||||| |||  |||| |||||| ||| ||||||||| |||||||| |||||||| |||||||| ||||||| ||||| |||||||| | |||||||||    
T  5051703 tgtcccagatccctgtgcaggaagtgatggtggtgtgaggtggtgacagtggtgaggtaagtctcggttttggaggtaataggaggtgttggtggtggtt 5051604  T
Q  134 ttggtactgtaactgcgacggtgttggtttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggtt 233  Q
    || ||||  ||  ||||     |||| ||||||||||| | ||||||||||||||||| ||||||| | |||  ||||||||||||||||||||||||||    
T  5051603 ttagtacaatagttgcg-----gttgttttcttccttgcgtgtgctgagtttgcggctcttagaaaaatacaaattgtctggtgtttttgtgtggtggtt 5051509  T
Q  234 gtttccttcccatccagat 252  Q
    |||||||||| ||||||||    
T  5051508 gtttccttccaatccagat 5051490  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 36593095 - 36593006
Alignment:
Q  163 tcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||||||| ||||||||||| |||| |||| ||||| | |||||||||||||||||||||| |||||||||||  ||||||||    
T  36593095 tcttccttgtgggtgttgagtttgcggttgttggaaaaacacatgctgtctggtgtttttgtgtggtgattgtttccttctgatccagat 36593006  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 36592928 - 36592831
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggtcaa-ctactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||| ||||||||| |||| ||||||||||| ||||    |||||||||||| |||||||||||||| |||||| ||||||| || ||||||||    
T  36592928 tcttcaactgttgggttcgatcataaccttctcacccggtttggctactctgttatctggtggtttgtcgacgtggatcgatggtggtgctgttgtga 36592831  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 5051412 - 5051335
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggtca-actactctgttatttggtggtttgtcgatgtggat 406  Q
    |||||||||||||||||| |||| ||||||||||  ||||   ||||||||||||| ||||||||||| |||||||||    
T  5051412 tcttcaacggttgggttcgatcataaccttctcatccggtttgactactctgttatatggtggtttgttgatgtggat 5051335  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 20519210 - 20519119
Alignment:
Q  161 tttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  20519210 tttcttccttgtgggtgctgagtttgcggttgttagaaaaacacaagttgtctggagtttttgtgtggtggttgtttccttccgatccagat 20519119  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 38149387 - 38149476
Alignment:
Q  163 tcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  38149387 tcttccttgtgggtgctgagtttgcggttgttggaaaaacacatgttgtctggtgtttttgtgtggtggttgtttccttccgatccagat 38149476  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 32919386 - 32919476
Alignment:
Q  163 tcttccttgtgggtgctgagtttgcggctgttagaaatacacaggt-tgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||| ||||||||||||||||||||| |||| |||| ||||| || ||| ||||| ||||||||||||||||||||||||| ||||||||    
T  32919386 tcttctttgtgggtgctgagtttgcggttgttggaaaaacacatgtgtgtttggtgcttttgtgtggtggttgtttccttccgatccagat 32919476  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 38149566 - 38149639
Alignment:
Q  342 gggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtg 414  Q
    |||||| |||||||||||||||| |||| |   |||||||||||||||||||||||||| |||||| |||||||    
T  38149566 gggttcgatcagaaccttctcacccggttcgggtactctgttatttggtggtttgtcgacgtggatcgatggtg 38149639  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 414
Target Start/End: Original strand, 32919544 - 32919630
Alignment:
Q  330 tcttcaacggttgggttcaatcagaacctt-ctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtg 414  Q
    |||| ||| ||| ||||||||||||||||| ||||| |||| |   ||||||||||| |||||||||||||| |||||| |||||||    
T  32919544 tcttgaactgttaggttcaatcagaacctttctcacccggttcgggtactctgttatctggtggtttgtcgacgtggatcgatggtg 32919630  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 20519041 - 20518976
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcgg-tcaactactctgttatttggtggttt 394  Q
    |||||||||||||||||| |||||||| ||||||  ||| || |||||||| |||| |||||||||    
T  20519041 tcttcaacggttgggttcgatcagaacattctcatccggttcgactactcttttatctggtggttt 20518976  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 22696739 - 22696648
Alignment:
Q  161 tttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  22696739 tttcttccttgcgggtgctgagtttgcggctgttagaaaaacacaggttatctggtgtttatgtgtggtggttgtttccttccgatccagat 22696648  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 34502877 - 34502968
Alignment:
Q  161 tttcttccttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttccttcccatccagat 252  Q
    ||||||||||| ||||||||||||||||| |||||| || |||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  34502877 tttcttccttgcgggtgctgagtttgcggttgttagtaaaacacaggttgtctgttgtttttgtgtggtcgttgtttccttccaatccagat 34502968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 22696570 - 22696473
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttgttgttgtga 426  Q
    |||||||||||||||||| |||| |||||| |||  |||| | |||||||| |||| ||||||||||||||| ||||| |||||||||| || |||||    
T  22696570 tcttcaacggttgggttcgatcataaccttttcatccggttcgactactctattatctggtggtttgtcgatatggatcgatggtgttgctgctgtga 22696473  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 13032507 - 13032436
Alignment:
Q  169 ttgtgggtgctgagtttgcggctgttagaaatacacaggttgtctggtgtttttgtgtggtggttgtttcctt 241  Q
    ||||||||| |||||||| || ||||||| | ||| |||| || |||||||||||||||||||||| ||||||    
T  13032507 ttgtgggtgttgagtttgtggatgttagataaacataggt-gtttggtgtttttgtgtggtggttgattcctt 13032436  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 34503046 - 34503134
Alignment:
Q  330 tcttcaacggttgggttcaatcagaaccttctcactcggt-caactactctgttatttggtggtttgtcgatgtggattgatggtgttg 417  Q
    |||||||||||||| ||| || |||||||||| |  | || | ||||||||||||| ||||||||||  ||||||||| ||||||||||    
T  34503046 tcttcaacggttggtttcgataagaaccttctaagcctgttcgactactctgttatctggtggtttgctgatgtggatcgatggtgttg 34503134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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