View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13160_low_5 (Length: 413)
Name: NF13160_low_5
Description: NF13160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13160_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 36 - 394
Target Start/End: Complemental strand, 2734896 - 2734537
Alignment:
| Q |
36 |
acagtatgtttgtgaatgcggtgagagacagtaaacatgcggtgtgtgtgaagcacctagtcatatccatataatagtagagactcgattccgcgcatgt |
135 |
Q |
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| T |
2734896 |
acagtatgtttgtgaatgcggtgagagacagtaaacatgcggtgtgtgtgaagcacctagtcatatccatataatagtagagactcgattccgcacatgt |
2734797 |
T |
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| Q |
136 |
gtagtttaacttgattcatctgttagatctatttggctatcgtgtgctctgaagttctctgaattacgattgattgnnnnnnnnatctatccgtgagttt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2734796 |
gtagtttaacttgattcatctgttagatctatttggctatcgtgtgctctgaagttctctgaattacgattgattgttctttttatctatccgtgagttt |
2734697 |
T |
|
| Q |
236 |
gtcttcatgctttgttggatgcagaaaacttgtatgattgtttgttatatgaaattattcaaaaataacaagctaaataatgttataatttggaaac-nn |
334 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2734696 |
gtcttcatgctttgttggatgcagaaaacttgtatgtttgtttgttatatgaaattattcaaaaataacaagctaaataatgttataatttggaaacttt |
2734597 |
T |
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| Q |
335 |
nnnnngcaggaaattgttctatcagttacagttctaaatggcttcctccactctcatctc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2734596 |
tttatgcaggaaattgttctatcagttacagttctaaatggcttcctccactctcatctc |
2734537 |
T |
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