View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13160_low_6 (Length: 397)
Name: NF13160_low_6
Description: NF13160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13160_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 29911242 - 29911629
Alignment:
| Q |
10 |
ataatactaacacaagttaatcataatactacataaatatcactaacataagaggaatataccaactaatcacaagttaatcacgaaatcaaaccaagta |
109 |
Q |
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| T |
29911242 |
ataatactaacacaagttaatcataatactatataaatatcactaacataagaagaatataccaactaatcacaagttaatcacgaaaccaaaccaagta |
29911341 |
T |
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| Q |
110 |
acactaacacctctgatcaaacgtgtgtccggtgttcaacactgacacaacacatgtgatgtgattactttcaattaattctttttctcaacatgtcaag |
209 |
Q |
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| T |
29911342 |
acactaacacctctgatcaaacgtgtgtccggtgttcaacactgacacaacacatgtgatgtgattactttcaattaattctttttctcaacatgtcaag |
29911441 |
T |
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| Q |
210 |
tgttagcattttaaattttaaacataaaaattgctcaattagtttaattagcagaagnnnnnnnnnnnnntaactgattgatgaagaaattaccgaatga |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29911442 |
tgttagcattttaaattttaaacataaaaattgctcaattagtttaattagcagaagaaaaaacaaaaaataactgattgatgaagaaattaccgaatga |
29911541 |
T |
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| Q |
310 |
acatcaaaatagagaacactcattttgaaagccaagctccgagtagccaaagctctagcagaagcagatctaccaacaataccaagaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29911542 |
acatcaaaatagagaacactcattttgaaagccaagctccgagtagccaaagctctagcagaagcagatctaccaacaataccaagaa |
29911629 |
T |
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