View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_high_11 (Length: 283)
Name: NF13161_high_11
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 49247652 - 49247782
Alignment:
| Q |
1 |
agaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaaggaaatggctccgcaagcagaaaccaaagtaacg |
100 |
Q |
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| T |
49247652 |
agaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaaggaaatggctcagcaagcagaaaccaaagtaacg |
49247751 |
T |
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| Q |
101 |
actcaggaagaagaaaccaaagtaatggctc |
131 |
Q |
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| T |
49247752 |
actcaggaagaagaaaccaaagtaatggctc |
49247782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49247760 - 49247825
Alignment:
| Q |
1 |
agaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaa |
66 |
Q |
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| T |
49247760 |
agaagaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaagaaaccaa |
49247825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 49247876 - 49247918
Alignment:
| Q |
225 |
ccaaagaagcggttgaggaagagattgtggccaaagaagaaga |
267 |
Q |
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| T |
49247876 |
ccaaagaagcggttcaggaagagattgtggccaaagaagaaga |
49247918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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