View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_high_13 (Length: 263)
Name: NF13161_high_13
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 41460245 - 41460031
Alignment:
| Q |
36 |
acagactatgacaaaaatgagccaatcattcatagcagttataca--------cgcctcgctaccttcccttcccagttacttttactagttacaaccac |
127 |
Q |
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| T |
41460245 |
acagactatgacaaaaatgagccaatcattcatagcagttatacaaaagtacacgcctcgctaccttcccttcccagttacttttactagttacaaccac |
41460146 |
T |
|
| Q |
128 |
ttgatagaactcgtattacattcgttattatttgtcgctggacatcggcaatctcaggtagaaatgttaagagaagcttggttctaaataatattagcta |
227 |
Q |
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|||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41460145 |
ttgacagaactcgtattacactcgatattatttgtcgctggacatcggcaatctcaggtagaaatgttaagagaagcttggttctaaataatattagcta |
41460046 |
T |
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| Q |
228 |
cagaggtgcctgtat |
242 |
Q |
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||||||||||||||| |
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| T |
41460045 |
cagaggtgcctgtat |
41460031 |
T |
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