View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13161_high_14 (Length: 250)
Name: NF13161_high_14
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_high_14 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 45363577 - 45363801
Alignment:
| Q |
13 |
aaaatatatatgaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctga |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
45363577 |
aaaatatatatgaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctga |
45363671 |
T |
|
| Q |
113 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45363672 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataaca |
45363763 |
T |
|
| Q |
213 |
gaaacaggagagaagggacataattccaagaaggcaga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45363764 |
gaaacaggagagaagggacataattccaagaaggcaga |
45363801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 45382396 - 45382620
Alignment:
| Q |
13 |
aaaatatatatgaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctga |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
45382396 |
aaaatatatatgaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctga |
45382490 |
T |
|
| Q |
113 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45382491 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataaca |
45382582 |
T |
|
| Q |
213 |
gaaacaggagagaagggacataattccaagaaggcaga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45382583 |
gaaacaggagagaagggacataattccaagaaggcaga |
45382620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 45354098 - 45354298
Alignment:
| Q |
13 |
aaaatatatatgaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctga |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
45354098 |
aaaatatatatgaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctga |
45354192 |
T |
|
| Q |
113 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45354193 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataaca |
45354284 |
T |
|
| Q |
213 |
gaaacaggagagaa |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45354285 |
gaaacaggagagaa |
45354298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 45356659 - 45356859
Alignment:
| Q |
13 |
aaaatatatatgaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctga |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
45356659 |
aaaatatatatgaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctga |
45356753 |
T |
|
| Q |
113 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45356754 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataaca |
45356845 |
T |
|
| Q |
213 |
gaaacaggagagaa |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45356846 |
gaaacaggagagaa |
45356859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 45370400 - 45370600
Alignment:
| Q |
13 |
aaaatatatatgaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctga |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
45370400 |
aaaatatatatgaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctga |
45370494 |
T |
|
| Q |
113 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45370495 |
aattgctaatacaattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataaca |
45370586 |
T |
|
| Q |
213 |
gaaacaggagagaa |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45370587 |
gaaacaggagagaa |
45370600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 45374923 - 45375041
Alignment:
| Q |
124 |
caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45374923 |
caattctgataaagaattgtaaatcaatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggaga |
45375014 |
T |
|
| Q |
224 |
gaagggacataattccaagaaggcaga |
250 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
45375015 |
gaagggacataattccaagaaggcaga |
45375041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University