View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_high_15 (Length: 215)
Name: NF13161_high_15
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 45364709 - 45364577
Alignment:
| Q |
29 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45364709 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttga |
45364610 |
T |
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| Q |
129 |
aattttatttcataaatcacaatgcttttatag |
161 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
45364609 |
aattttatttcataaatcacaatgcttttatag |
45364577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 45375949 - 45375817
Alignment:
| Q |
29 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45375949 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttga |
45375850 |
T |
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| Q |
129 |
aattttatttcataaatcacaatgcttttatag |
161 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
45375849 |
aattttatttcataaatcacaatgcttttatag |
45375817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 45383528 - 45383396
Alignment:
| Q |
29 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttga |
128 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45383528 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttga |
45383429 |
T |
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| Q |
129 |
aattttatttcataaatcacaatgcttttatag |
161 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
45383428 |
aattttatttcataaatcacaatgcttttatag |
45383396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 45374919 - 45374787
Alignment:
| Q |
29 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttga |
128 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45374919 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccctgcatgttcaaatccaacttgttcaaattctgtgtaactggtttggttga |
45374820 |
T |
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| Q |
129 |
aattttatttcataaatcacaatgcttttatag |
161 |
Q |
| |
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|||||||||||| |||||| ||||||||||||| |
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| T |
45374819 |
aattttatttcacaaatcataatgcttttatag |
45374787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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