View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_high_4 (Length: 468)
Name: NF13161_high_4
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 25 - 449
Target Start/End: Complemental strand, 13744612 - 13744186
Alignment:
| Q |
25 |
taagtaaatgtatcggtctatgttacattattcaacaacaaacgtgaagacgtaatgaatgcccaacttcaaaccaaatgggaggtcaaacctgagagat |
124 |
Q |
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| T |
13744612 |
taagaaaatgtattggtctatgttacattattcaacaacaaacgtgatgacataatcaatgcccaacttcaaaccaaatgggagatcaaacctgagagat |
13744513 |
T |
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| Q |
125 |
gtgaagcaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtgataatgcaatggtcgtagagtaacacagctcttccacaaataaatcat |
224 |
Q |
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| T |
13744512 |
ctgaaccaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtggtaatgcaatggtcgtaaagtaacacagctcttccacaaataattcat |
13744413 |
T |
|
| Q |
225 |
tagcaaaaataaagacaagctcaacataaagcaagagaagatctatttaagtaaaatttcacaattggatnnnnnnnngcactaaaacttttgaagttta |
324 |
Q |
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| T |
13744412 |
tggcaaaaataaagacgagttcaacataaagcaagagagggtctatttaagtaaaattacataattggataaaaaaaaccactaaaactatcaaagttta |
13744313 |
T |
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| Q |
325 |
caaaataaacatagacttaaaaatcttaccgaagtcca-gtcagatgatgatccttcttcaatattactgttg-cagcttcacctggacgcttcattact |
422 |
Q |
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|||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13744312 |
caaaataaacatggacataaaaatcttaccaaagtccaggtcagatgatgatccttcttcaatattactgttgtcagcttcacctggacgcttcattact |
13744213 |
T |
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| Q |
423 |
gattccatatctttgagaaattgatcc |
449 |
Q |
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| T |
13744212 |
gattccatctctttgaaaaattgatcc |
13744186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 256 - 449
Target Start/End: Original strand, 52268863 - 52269057
Alignment:
| Q |
256 |
caagagaagatctatttaagtaaaatttcacaattggatnnnnnnnngcactaaaacttttgaagtttacaaaataaacatagacttaaaaatcttaccg |
355 |
Q |
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| T |
52268863 |
caagagaagatctatttaagtaaaatttcacaattggataaaaaaa-gcactaaaacttttgaagtttacaaaataaacatagacttaaaaatcttaccc |
52268961 |
T |
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| Q |
356 |
aagtcca-gtcagatgatgatccttcttcaatattactgttg-cagcttcacctggacgcttcattactgattccatatctttgagaaattgatcc |
449 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268962 |
aagtccaggtcagatgatgatccttcttcaatattactgttgtcagcttcacctggacgcttcattactgattccatatctttgagaaattgatcc |
52269057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 52268682 - 52268729
Alignment:
| Q |
196 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268682 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
52268729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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