View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_low_10 (Length: 335)
Name: NF13161_low_10
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 36537262 - 36536945
Alignment:
| Q |
18 |
agttgaagctccaaaacactttcttttctccaccaaaacaaactcacttctaatccttgatcgcttttactacaaagataacaatgtatgtggccaacac |
117 |
Q |
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| T |
36537262 |
agttgaagctccaaaacactttcttttctccaccaaaacaaactcacttctaatccttgatcgcttttactacaaagataacaatgtatgtggccaacac |
36537163 |
T |
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| Q |
118 |
ctatttcttctagataccaaaacaaaacatctcaaagagcttcatattccaagagttacaaattctgatatgggttataagatcatagcttcatgcaatg |
217 |
Q |
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| T |
36537162 |
ctatttcttctagataccaaaacaaaacatctcaaagagcttcatattccaagagttacaaattctgatatgggttataagatcatagcttcatgcaatg |
36537063 |
T |
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| Q |
218 |
gtttattttgtattgctcattattccttagaccaatactcaacccttttcctttggaatccaaccacaaaacaaaccaaaagaatcattgaaccgctaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36537062 |
gtttattttgtattgctcattattccttagaccaatactcaacccttttcctttggaatccaaccacaaaacaaaccaaaagaatcattgaaccgccaca |
36536963 |
T |
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| Q |
318 |
tcgtcaacaacctttgct |
335 |
Q |
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|||||||||||||||||| |
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| T |
36536962 |
tcgtcaacaacctttgct |
36536945 |
T |
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