View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_low_11 (Length: 294)
Name: NF13161_low_11
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 163 - 294
Target Start/End: Complemental strand, 36568869 - 36568738
Alignment:
| Q |
163 |
ctttagactaataatcataacttcttcaaaaagaaagaaatgaaagaggaagacaggtaagtacatcatagtttaacaaacaatcttttcctctttctat |
262 |
Q |
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| T |
36568869 |
ctttagactaataatcataacttcttcaaaaagaaagaaatgaaagaggaagacaggtaagtacatcatagtttaacaaacaatcttttcctctttctat |
36568770 |
T |
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| Q |
263 |
ccaagcatcagagaaccgttaatggttcaaat |
294 |
Q |
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| T |
36568769 |
ccaagcatcagagaatcgttaatggttcaaat |
36568738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 36568964 - 36568922
Alignment:
| Q |
69 |
atatgctataactctagaaggaagaggtcaagtatttctaaag |
111 |
Q |
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| T |
36568964 |
atatgctataactctagaaggaagaggtcaagtatttctaaag |
36568922 |
T |
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