View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_low_13 (Length: 280)
Name: NF13161_low_13
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 48075214 - 48075289
Alignment:
| Q |
172 |
gaatcatcccaaaaaggaagtgaaggagaaactttgaataatgtaaatatataggtagaatagggtatgagacatg |
247 |
Q |
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| T |
48075214 |
gaatcatcccaaaaaggaagtgaaggagaaactttgaataatgtaaatatataggtagaatagggtatgagacatg |
48075289 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 48075070 - 48075155
Alignment:
| Q |
17 |
caatttagacttccagattatgttgtgtacctcatttctgagtatcgtaaaattcttgcggtattactctactctcttccgatctgtttgc |
107 |
Q |
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| T |
48075070 |
caatttagacttccagattatgttgtgtacctcatttctgagtatcgtaaaattcttgcggtat-----tactctcttccgatctgtttgc |
48075155 |
T |
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