View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13161_low_14 (Length: 279)
Name: NF13161_low_14
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 47258773 - 47258545
Alignment:
| Q |
1 |
cttggggtggggtaatatcttcatacttcctttataatttaaaagaaaaatcaatcacattaatgttcaagaaaataaagaaaaggtatatggaatattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47258773 |
cttggggtggggtaatatcttcatacttcctttataatttaaaagaaaaatcaatcacattaatgttcaagaaaataaagaaaaggtatatggaatattt |
47258674 |
T |
|
| Q |
101 |
aaagatggtgaagaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaatatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47258673 |
aaagatggtgaagaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaatatatct |
47258574 |
T |
|
| Q |
201 |
atgtatgatacagcaagatgaagtgtatc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47258573 |
atgtatgatacagcaagatgaagtgtatc |
47258545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 47266145 - 47265914
Alignment:
| Q |
3 |
tggggtggggtaatatcttcatacttccttt-ataatttaaaaga-aaaatcaatcacat--taatgttcaagaaaataaa--gaaaaggtatatggaat |
96 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || || |||| | ||||||||||| || ||||||||||||||||||| ||||| || || |
|
|
| T |
47266145 |
tggggtgggttaatatcttcatacttccttttatgatcaaaaaaataaaatcaatca-atcataatgttcaagaaaataaaaagaaaaatcattcacaaa |
47266047 |
T |
|
| Q |
97 |
attcaaagatggtgaagaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaatat |
196 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| | |||||||||||||| ||||| ||| |||| ||| | |||||||| | |||||||||| | |
|
|
| T |
47266046 |
attcaaagcgggtatagaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggtaataagataggaacct |
47265947 |
T |
|
| Q |
197 |
atctatgtatgatacagcaagatgaagtgtatc |
229 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |
|
|
| T |
47265946 |
atctatgtatgaaacagcgcgatgaagtgtatc |
47265914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 47258473 - 47258429
Alignment:
| Q |
224 |
tgtatctctgaagcatctccatgtaatccttcattggtcttctct |
268 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47258473 |
tgtatctctgaagtatctccatgtaatccttcattggtcttctct |
47258429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 47265838 - 47265798
Alignment:
| Q |
228 |
tctctgaagcatctccatgtaatccttcattggtcttctct |
268 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
47265838 |
tctctgaactatatccatgtaatccttcattggtcttctct |
47265798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University