View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_low_2 (Length: 553)
Name: NF13161_low_2
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 28191465 - 28191988
Alignment:
| Q |
19 |
aattaggaagcaaaaaattctacaaaatcaacaagtaaaaaggaatcgagggagtaatagcttaactttcagggtagctatcctctcacaccataatttt |
118 |
Q |
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| T |
28191465 |
aattagggagcaaaaaattctacaaaatcaacaagtaaaaaggaatcgagggagtaatagcttaactttcagggtagctatcctctcacaccataatttt |
28191564 |
T |
|
| Q |
119 |
tccagagataaataaacaagtttgtttactggctcatggaagaatagaacagagtacagattaacgattcatccaattcccatgtgatattatcaatata |
218 |
Q |
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| T |
28191565 |
tccagagataaataaacaactttgtttactggctcatggaagaatagtacagagtacagattaacgattcatccaattcccatgtgatattatcaatata |
28191664 |
T |
|
| Q |
219 |
acataaattatctaatgccatgaagatagaaggccttttaaatctatcataacagtgtatatgctagattgatagtttctgcaagaaattaaggtcctcc |
318 |
Q |
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| T |
28191665 |
acataaattatctaatgccatgaagatagaaggccttttaaatctatcataacagtgtatatgctagattgatagtttctgcaagaaattaaggtcctcc |
28191764 |
T |
|
| Q |
319 |
atcactatggtctagccatcacagtaccagcagatgatgacaatgctcctcattgatcatgtaacatcaattaagcatattattgaccgagcaactttga |
418 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28191765 |
atcactatgatctagccatcacagtaccagcagatgatgacagtgctcctcattgatcatgtaacatcaattaagcatattattgaccgagcaactttga |
28191864 |
T |
|
| Q |
419 |
gtcacatgccacgattttaacccgtccaacattctcttgtttgtcttcactcttaaacaaagcatcttgtaagatgaaggtccagacattgtcacaaaat |
518 |
Q |
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| T |
28191865 |
gtcacatgccacgattttaacccgtccaacattctcttgtttgtcttcactcttaaacaaagcatcttgtaagatgaaggtccagacattgtcacaaaat |
28191964 |
T |
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| Q |
519 |
ctgtatgtatgaagatgtccctat |
542 |
Q |
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| T |
28191965 |
ctgtatgtatgaagatgtccctat |
28191988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 387 - 540
Target Start/End: Original strand, 159919 - 160072
Alignment:
| Q |
387 |
aattaagcatattattgaccgagcaactttgagtcacatgccacgattttaacccgtccaacattctcttgtttgtcttcactcttaaacaaagcatctt |
486 |
Q |
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|||| ||||||||| |||| |||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
159919 |
aattgagcatattactgactgagcaatttcgagtcacatgccactattttaacccgtccaacattctcttggttgtcttcattcttaaacaaagcatctt |
160018 |
T |
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| Q |
487 |
gtaagatgaaggtccagacattgtcacaaaatctgtatgtatgaagatgtccct |
540 |
Q |
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| T |
160019 |
gtaagatgaaggtccaaacattgtcacaaaatctgtatgtatgcagatgtccct |
160072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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